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CEACAM20 (carcinoembryonic antigen related cell adhesion molecule 20)

Identity

Alias_namescarcinoembryonic antigen-related cell adhesion molecule 20
Alias_symbol (synonym)UNQ9366
Other alias
HGNC (Hugo) CEACAM20
LocusID (NCBI) 125931
Atlas_Id 61678
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44506159 and ends at 44529525 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEACAM22P (19q13.31) / CEACAM20 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM20   24879
Cards
Entrez_Gene (NCBI)CEACAM20  125931  carcinoembryonic antigen related cell adhesion molecule 20
AliasesUNQ9366
GeneCards (Weizmann)CEACAM20
Ensembl hg19 (Hinxton)ENSG00000273777 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273777 [Gene_View]  chr19:44506159-44529525 [Contig_View]  CEACAM20 [Vega]
ICGC DataPortalENSG00000273777
TCGA cBioPortalCEACAM20
AceView (NCBI)CEACAM20
Genatlas (Paris)CEACAM20
WikiGenes125931
SOURCE (Princeton)CEACAM20
Genetics Home Reference (NIH)CEACAM20
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM20  -     chr19:44506159-44529525 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM20  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblCEACAM20 - 19q13.31 [CytoView hg19]  CEACAM20 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBICEACAM20 [Mapview hg19]  CEACAM20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358129 BC172298 EU008600 EU008601 EU008602
RefSeq transcript (Entrez)NM_001102597 NM_001102598 NM_001102599 NM_001102600 NM_198444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM20
Cluster EST : UnigeneHs.689632 [ NCBI ]
CGAP (NCI)Hs.689632
Alternative Splicing GalleryENSG00000273777
Gene ExpressionCEACAM20 [ NCBI-GEO ]   CEACAM20 [ EBI - ARRAY_EXPRESS ]   CEACAM20 [ SEEK ]   CEACAM20 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125931
GTEX Portal (Tissue expression)CEACAM20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UY09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UY09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UY09
Splice isoforms : SwissVarQ6UY09
PhosPhoSitePlusQ6UY09
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM20
DMDM Disease mutations125931
Blocks (Seattle)CEACAM20
SuperfamilyQ6UY09
Human Protein AtlasENSG00000273777
Peptide AtlasQ6UY09
HPRD18273
IPIIPI00789178   IPI00855837   IPI00855911   IPI00855882   
Protein Interaction databases
DIP (DOE-UCLA)Q6UY09
IntAct (EBI)Q6UY09
FunCoupENSG00000273777
BioGRIDCEACAM20
STRING (EMBL)CEACAM20
ZODIACCEACAM20
Ontologies - Pathways
QuickGOQ6UY09
Ontology : AmiGOimmune system process  integral component of membrane  apical plasma membrane  microvillus membrane  
Ontology : EGO-EBIimmune system process  integral component of membrane  apical plasma membrane  microvillus membrane  
NDEx NetworkCEACAM20
Atlas of Cancer Signalling NetworkCEACAM20
Wikipedia pathwaysCEACAM20
Orthology - Evolution
OrthoDB125931
GeneTree (enSembl)ENSG00000273777
Phylogenetic Trees/Animal Genes : TreeFamCEACAM20
HOVERGENQ6UY09
HOGENOMQ6UY09
Homologs : HomoloGeneCEACAM20
Homology/Alignments : Family Browser (UCSC)CEACAM20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM20
dbVarCEACAM20
ClinVarCEACAM20
1000_GenomesCEACAM20 
Exome Variant ServerCEACAM20
ExAC (Exome Aggregation Consortium)CEACAM20 (select the gene name)
Genetic variants : HAPMAP125931
Genomic Variants (DGV)CEACAM20 [DGVbeta]
DECIPHERCEACAM20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM20 
Mutations
ICGC Data PortalCEACAM20 
TCGA Data PortalCEACAM20 
Broad Tumor PortalCEACAM20
OASIS PortalCEACAM20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM20
DgiDB (Drug Gene Interaction Database)CEACAM20
DoCM (Curated mutations)CEACAM20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM20 (select a term)
intoGenCEACAM20
Cancer3DCEACAM20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEACAM20
Genetic Testing Registry CEACAM20
NextProtQ6UY09 [Medical]
TSGene125931
GENETestsCEACAM20
Target ValidationCEACAM20
Huge Navigator CEACAM20 [HugePedia]
snp3D : Map Gene to Disease125931
BioCentury BCIQCEACAM20
ClinGenCEACAM20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125931
Chemical/Pharm GKB GenePA142672134
Clinical trialCEACAM20
Miscellaneous
canSAR (ICR)CEACAM20 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM20
EVEXCEACAM20
GoPubMedCEACAM20
iHOPCEACAM20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:29 CEST 2017

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