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CEACAM21 (carcinoembryonic antigen-related cell adhesion molecule 21)

Identity

Alias_namescarcinoembryonic antigen-related cell adhesion molecule 21
Alias_symbol (synonym)R29124_1
FLJ13540
Other aliasCEACAM3
HGNC (Hugo) CEACAM21
LocusID (NCBI) 90273
Atlas_Id 61679
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42082531 and ends at 42093197 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SYNE1 (6q25.1) / CEACAM21 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM21   28834
Cards
Entrez_Gene (NCBI)CEACAM21  90273  carcinoembryonic antigen-related cell adhesion molecule 21
AliasesCEACAM3; R29124_1
GeneCards (Weizmann)CEACAM21
Ensembl hg19 (Hinxton)ENSG00000007129 [Gene_View]  chr19:42082531-42093197 [Contig_View]  CEACAM21 [Vega]
Ensembl hg38 (Hinxton)ENSG00000007129 [Gene_View]  chr19:42082531-42093197 [Contig_View]  CEACAM21 [Vega]
ICGC DataPortalENSG00000007129
TCGA cBioPortalCEACAM21
AceView (NCBI)CEACAM21
Genatlas (Paris)CEACAM21
WikiGenes90273
SOURCE (Princeton)CEACAM21
Genetics Home Reference (NIH)CEACAM21
Genomic and cartography
GoldenPath hg19 (UCSC)CEACAM21  -     chr19:42082531-42093197 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CEACAM21  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblCEACAM21 - 19q13.2 [CytoView hg19]  CEACAM21 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM21 [Mapview hg19]  CEACAM21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI565085 AK023602 AY358084 BC012001 BC106727
RefSeq transcript (Entrez)NM_001098506 NM_001288773 NM_001290113 NM_033543
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NT_187620 NW_004929415
Consensus coding sequences : CCDS (NCBI)CEACAM21
Cluster EST : UnigeneHs.655885 [ NCBI ]
CGAP (NCI)Hs.655885
Alternative Splicing GalleryENSG00000007129
Gene ExpressionCEACAM21 [ NCBI-GEO ]   CEACAM21 [ EBI - ARRAY_EXPRESS ]   CEACAM21 [ SEEK ]   CEACAM21 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90273
GTEX Portal (Tissue expression)CEACAM21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KPI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KPI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KPI0
Splice isoforms : SwissVarQ3KPI0
PhosPhoSitePlusQ3KPI0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM21
DMDM Disease mutations90273
Blocks (Seattle)CEACAM21
SuperfamilyQ3KPI0
Human Protein AtlasENSG00000007129
Peptide AtlasQ3KPI0
HPRD10179
IPIIPI00018667   IPI00855779   IPI00796175   IPI00878578   
Protein Interaction databases
DIP (DOE-UCLA)Q3KPI0
IntAct (EBI)Q3KPI0
FunCoupENSG00000007129
BioGRIDCEACAM21
STRING (EMBL)CEACAM21
ZODIACCEACAM21
Ontologies - Pathways
QuickGOQ3KPI0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCEACAM21
Atlas of Cancer Signalling NetworkCEACAM21
Wikipedia pathwaysCEACAM21
Orthology - Evolution
OrthoDB90273
GeneTree (enSembl)ENSG00000007129
Phylogenetic Trees/Animal Genes : TreeFamCEACAM21
HOVERGENQ3KPI0
HOGENOMQ3KPI0
Homologs : HomoloGeneCEACAM21
Homology/Alignments : Family Browser (UCSC)CEACAM21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM21
dbVarCEACAM21
ClinVarCEACAM21
1000_GenomesCEACAM21 
Exome Variant ServerCEACAM21
ExAC (Exome Aggregation Consortium)CEACAM21 (select the gene name)
Genetic variants : HAPMAP90273
Genomic Variants (DGV)CEACAM21 [DGVbeta]
DECIPHER (Syndromes)19:42082531-42093197  ENSG00000007129
CONAN: Copy Number AnalysisCEACAM21 
Mutations
ICGC Data PortalCEACAM21 
TCGA Data PortalCEACAM21 
Broad Tumor PortalCEACAM21
OASIS PortalCEACAM21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM21
DgiDB (Drug Gene Interaction Database)CEACAM21
DoCM (Curated mutations)CEACAM21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM21 (select a term)
intoGenCEACAM21
Cancer3DCEACAM21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEACAM21
Genetic Testing Registry CEACAM21
NextProtQ3KPI0 [Medical]
TSGene90273
GENETestsCEACAM21
Huge Navigator CEACAM21 [HugePedia]
snp3D : Map Gene to Disease90273
BioCentury BCIQCEACAM21
ClinGenCEACAM21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90273
Chemical/Pharm GKB GenePA142672135
Clinical trialCEACAM21
Miscellaneous
canSAR (ICR)CEACAM21 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM21
EVEXCEACAM21
GoPubMedCEACAM21
iHOPCEACAM21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:00 CET 2017

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