Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEACAM3 (carcinoembryonic antigen related cell adhesion molecule 3)

Identity

Alias_namesCGM1
carcinoembryonic antigen-related cell adhesion molecule 3
Alias_symbol (synonym)CD66d
Other aliasCD66D
CEA
W264
W282
HGNC (Hugo) CEACAM3
LocusID (NCBI) 1084
Atlas_Id 40045
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41796590 and ends at 41811553 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM3   1815
Cards
Entrez_Gene (NCBI)CEACAM3  1084  carcinoembryonic antigen related cell adhesion molecule 3
AliasesCD66D; CEA; CGM1; W264; 
W282
GeneCards (Weizmann)CEACAM3
Ensembl hg19 (Hinxton)ENSG00000170956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170956 [Gene_View]  chr19:41796590-41811553 [Contig_View]  CEACAM3 [Vega]
ICGC DataPortalENSG00000170956
TCGA cBioPortalCEACAM3
AceView (NCBI)CEACAM3
Genatlas (Paris)CEACAM3
WikiGenes1084
SOURCE (Princeton)CEACAM3
Genetics Home Reference (NIH)CEACAM3
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM3  -     chr19:41796590-41811553 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM3  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCEACAM3 - 19q13.2 [CytoView hg19]  CEACAM3 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM3 [Mapview hg19]  CEACAM3 [Mapview hg38]
OMIM609142   
Gene and transcription
Genbank (Entrez)AK298694 BC106728 D90277 D90278 DA674909
RefSeq transcript (Entrez)NM_001277163 NM_001815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM3
Cluster EST : UnigeneHs.11 [ NCBI ]
CGAP (NCI)Hs.11
Alternative Splicing GalleryENSG00000170956
Gene ExpressionCEACAM3 [ NCBI-GEO ]   CEACAM3 [ EBI - ARRAY_EXPRESS ]   CEACAM3 [ SEEK ]   CEACAM3 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1084
GTEX Portal (Tissue expression)CEACAM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40198   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40198  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40198
Splice isoforms : SwissVarP40198
PhosPhoSitePlusP40198
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Conserved Domain (NCBI)CEACAM3
DMDM Disease mutations1084
Blocks (Seattle)CEACAM3
SuperfamilyP40198
Human Protein AtlasENSG00000170956
Peptide AtlasP40198
HPRD16450
IPIIPI00027411   IPI00411778   IPI00289794   
Protein Interaction databases
DIP (DOE-UCLA)P40198
IntAct (EBI)P40198
FunCoupENSG00000170956
BioGRIDCEACAM3
STRING (EMBL)CEACAM3
ZODIACCEACAM3
Ontologies - Pathways
QuickGOP40198
Ontology : AmiGOplasma membrane  integral component of membrane  specific granule membrane  neutrophil degranulation  leukocyte migration  
Ontology : EGO-EBIplasma membrane  integral component of membrane  specific granule membrane  neutrophil degranulation  leukocyte migration  
NDEx NetworkCEACAM3
Atlas of Cancer Signalling NetworkCEACAM3
Wikipedia pathwaysCEACAM3
Orthology - Evolution
OrthoDB1084
GeneTree (enSembl)ENSG00000170956
Phylogenetic Trees/Animal Genes : TreeFamCEACAM3
HOVERGENP40198
HOGENOMP40198
Homologs : HomoloGeneCEACAM3
Homology/Alignments : Family Browser (UCSC)CEACAM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM3
dbVarCEACAM3
ClinVarCEACAM3
1000_GenomesCEACAM3 
Exome Variant ServerCEACAM3
ExAC (Exome Aggregation Consortium)CEACAM3 (select the gene name)
Genetic variants : HAPMAP1084
Genomic Variants (DGV)CEACAM3 [DGVbeta]
DECIPHERCEACAM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM3 
Mutations
ICGC Data PortalCEACAM3 
TCGA Data PortalCEACAM3 
Broad Tumor PortalCEACAM3
OASIS PortalCEACAM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM3
DgiDB (Drug Gene Interaction Database)CEACAM3
DoCM (Curated mutations)CEACAM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM3 (select a term)
intoGenCEACAM3
Cancer3DCEACAM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609142   
Orphanet
MedgenCEACAM3
Genetic Testing Registry CEACAM3
NextProtP40198 [Medical]
TSGene1084
GENETestsCEACAM3
Target ValidationCEACAM3
Huge Navigator CEACAM3 [HugePedia]
snp3D : Map Gene to Disease1084
BioCentury BCIQCEACAM3
ClinGenCEACAM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1084
Chemical/Pharm GKB GenePA26359
Clinical trialCEACAM3
Miscellaneous
canSAR (ICR)CEACAM3 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM3
EVEXCEACAM3
GoPubMedCEACAM3
iHOPCEACAM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:53 CEST 2017

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