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CEACAM4 (carcinoembryonic antigen related cell adhesion molecule 4)

Identity

Alias_namesCGM7
carcinoembryonic antigen-related cell adhesion molecule 4
Other aliasCGM7_HUMAN
NCA
HGNC (Hugo) CEACAM4
LocusID (NCBI) 1089
Atlas_Id 40046
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41618971 and ends at 41627074 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM4   1816
Cards
Entrez_Gene (NCBI)CEACAM4  1089  carcinoembryonic antigen related cell adhesion molecule 4
AliasesCGM7; CGM7_HUMAN; NCA
GeneCards (Weizmann)CEACAM4
Ensembl hg19 (Hinxton)ENSG00000105352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105352 [Gene_View]  chr19:41618971-41627074 [Contig_View]  CEACAM4 [Vega]
ICGC DataPortalENSG00000105352
TCGA cBioPortalCEACAM4
AceView (NCBI)CEACAM4
Genatlas (Paris)CEACAM4
WikiGenes1089
SOURCE (Princeton)CEACAM4
Genetics Home Reference (NIH)CEACAM4
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM4  -     chr19:41618971-41627074 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM4  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCEACAM4 - 19q13.2 [CytoView hg19]  CEACAM4 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM4 [Mapview hg19]  CEACAM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB924369 AB924370 AK298701 BC172306 BF819374
RefSeq transcript (Entrez)NM_001817
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187620
Consensus coding sequences : CCDS (NCBI)CEACAM4
Cluster EST : UnigeneHs.12 [ NCBI ]
CGAP (NCI)Hs.12
Alternative Splicing GalleryENSG00000105352
Gene ExpressionCEACAM4 [ NCBI-GEO ]   CEACAM4 [ EBI - ARRAY_EXPRESS ]   CEACAM4 [ SEEK ]   CEACAM4 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1089
GTEX Portal (Tissue expression)CEACAM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75871   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75871  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75871
Splice isoforms : SwissVarO75871
PhosPhoSitePlusO75871
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Conserved Domain (NCBI)CEACAM4
DMDM Disease mutations1089
Blocks (Seattle)CEACAM4
SuperfamilyO75871
Human Protein AtlasENSG00000105352
Peptide AtlasO75871
HPRD07628
IPIIPI00019020   IPI00908442   
Protein Interaction databases
DIP (DOE-UCLA)O75871
IntAct (EBI)O75871
FunCoupENSG00000105352
BioGRIDCEACAM4
STRING (EMBL)CEACAM4
ZODIACCEACAM4
Ontologies - Pathways
QuickGOO75871
Ontology : AmiGOintegral component of plasma membrane  phagocytosis  membrane  
Ontology : EGO-EBIintegral component of plasma membrane  phagocytosis  membrane  
NDEx NetworkCEACAM4
Atlas of Cancer Signalling NetworkCEACAM4
Wikipedia pathwaysCEACAM4
Orthology - Evolution
OrthoDB1089
GeneTree (enSembl)ENSG00000105352
Phylogenetic Trees/Animal Genes : TreeFamCEACAM4
HOVERGENO75871
HOGENOMO75871
Homologs : HomoloGeneCEACAM4
Homology/Alignments : Family Browser (UCSC)CEACAM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM4
dbVarCEACAM4
ClinVarCEACAM4
1000_GenomesCEACAM4 
Exome Variant ServerCEACAM4
ExAC (Exome Aggregation Consortium)CEACAM4 (select the gene name)
Genetic variants : HAPMAP1089
Genomic Variants (DGV)CEACAM4 [DGVbeta]
DECIPHERCEACAM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM4 
Mutations
ICGC Data PortalCEACAM4 
TCGA Data PortalCEACAM4 
Broad Tumor PortalCEACAM4
OASIS PortalCEACAM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM4
DgiDB (Drug Gene Interaction Database)CEACAM4
DoCM (Curated mutations)CEACAM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM4 (select a term)
intoGenCEACAM4
Cancer3DCEACAM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEACAM4
Genetic Testing Registry CEACAM4
NextProtO75871 [Medical]
TSGene1089
GENETestsCEACAM4
Target ValidationCEACAM4
Huge Navigator CEACAM4 [HugePedia]
snp3D : Map Gene to Disease1089
BioCentury BCIQCEACAM4
ClinGenCEACAM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1089
Chemical/Pharm GKB GenePA26360
Clinical trialCEACAM4
Miscellaneous
canSAR (ICR)CEACAM4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM4
EVEXCEACAM4
GoPubMedCEACAM4
iHOPCEACAM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:33 CEST 2017

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