Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEACAM6 (carcinoembryonic antigen related cell adhesion molecule 6)

Identity

Alias_namesNCA
carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
Alias_symbol (synonym)CD66c
Other aliasCEAL
HGNC (Hugo) CEACAM6
LocusID (NCBI) 4680
Atlas_Id 46451
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41755520 and ends at 41772208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEACAM6 (19q13.2) / CAPN5 (11q13.5)CEACAM6 (19q13.2) / ZNF37A (10p11.1)CEACAM7 (19q13.2) / CEACAM6 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM6   1818
Cards
Entrez_Gene (NCBI)CEACAM6  4680  carcinoembryonic antigen related cell adhesion molecule 6
AliasesCD66c; CEAL; NCA
GeneCards (Weizmann)CEACAM6
Ensembl hg19 (Hinxton)ENSG00000086548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086548 [Gene_View]  chr19:41755520-41772208 [Contig_View]  CEACAM6 [Vega]
ICGC DataPortalENSG00000086548
TCGA cBioPortalCEACAM6
AceView (NCBI)CEACAM6
Genatlas (Paris)CEACAM6
WikiGenes4680
SOURCE (Princeton)CEACAM6
Genetics Home Reference (NIH)CEACAM6
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM6  -     chr19:41755520-41772208 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM6  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCEACAM6 - 19q13.2 [CytoView hg19]  CEACAM6 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM6 [Mapview hg19]  CEACAM6 [Mapview hg38]
OMIM163980   
Gene and transcription
Genbank (Entrez)AK312542 BC005008 BI015601 BT009774 DA442875
RefSeq transcript (Entrez)NM_002483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM6
Cluster EST : UnigeneHs.466814 [ NCBI ]
CGAP (NCI)Hs.466814
Alternative Splicing GalleryENSG00000086548
Gene ExpressionCEACAM6 [ NCBI-GEO ]   CEACAM6 [ EBI - ARRAY_EXPRESS ]   CEACAM6 [ SEEK ]   CEACAM6 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4680
GTEX Portal (Tissue expression)CEACAM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40199   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40199  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40199
Splice isoforms : SwissVarP40199
PhosPhoSitePlusP40199
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM6
DMDM Disease mutations4680
Blocks (Seattle)CEACAM6
PDB (SRS)4WHC    4WTZ    4Y8A    4YIQ   
PDB (PDBSum)4WHC    4WTZ    4Y8A    4YIQ   
PDB (IMB)4WHC    4WTZ    4Y8A    4YIQ   
PDB (RSDB)4WHC    4WTZ    4Y8A    4YIQ   
Structural Biology KnowledgeBase4WHC    4WTZ    4Y8A    4YIQ   
SCOP (Structural Classification of Proteins)4WHC    4WTZ    4Y8A    4YIQ   
CATH (Classification of proteins structures)4WHC    4WTZ    4Y8A    4YIQ   
SuperfamilyP40199
Human Protein AtlasENSG00000086548
Peptide AtlasP40199
HPRD01233
IPIIPI00027412   IPI00383376   IPI00017021   
Protein Interaction databases
DIP (DOE-UCLA)P40199
IntAct (EBI)P40199
FunCoupENSG00000086548
BioGRIDCEACAM6
STRING (EMBL)CEACAM6
ZODIACCEACAM6
Ontologies - Pathways
QuickGOP40199
Ontology : AmiGOprotein binding  extracellular space  plasma membrane  integral component of plasma membrane  signal transduction  cell-cell signaling  positive regulation of cell proliferation  positive regulation of cell migration  anchored component of membrane  azurophil granule membrane  neutrophil degranulation  leukocyte migration  
Ontology : EGO-EBIprotein binding  extracellular space  plasma membrane  integral component of plasma membrane  signal transduction  cell-cell signaling  positive regulation of cell proliferation  positive regulation of cell migration  anchored component of membrane  azurophil granule membrane  neutrophil degranulation  leukocyte migration  
NDEx NetworkCEACAM6
Atlas of Cancer Signalling NetworkCEACAM6
Wikipedia pathwaysCEACAM6
Orthology - Evolution
OrthoDB4680
GeneTree (enSembl)ENSG00000086548
Phylogenetic Trees/Animal Genes : TreeFamCEACAM6
HOVERGENP40199
HOGENOMP40199
Homologs : HomoloGeneCEACAM6
Homology/Alignments : Family Browser (UCSC)CEACAM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM6
dbVarCEACAM6
ClinVarCEACAM6
1000_GenomesCEACAM6 
Exome Variant ServerCEACAM6
ExAC (Exome Aggregation Consortium)CEACAM6 (select the gene name)
Genetic variants : HAPMAP4680
Genomic Variants (DGV)CEACAM6 [DGVbeta]
DECIPHERCEACAM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM6 
Mutations
ICGC Data PortalCEACAM6 
TCGA Data PortalCEACAM6 
Broad Tumor PortalCEACAM6
OASIS PortalCEACAM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM6
DgiDB (Drug Gene Interaction Database)CEACAM6
DoCM (Curated mutations)CEACAM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM6 (select a term)
intoGenCEACAM6
Cancer3DCEACAM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM163980   
Orphanet
MedgenCEACAM6
Genetic Testing Registry CEACAM6
NextProtP40199 [Medical]
TSGene4680
GENETestsCEACAM6
Target ValidationCEACAM6
Huge Navigator CEACAM6 [HugePedia]
snp3D : Map Gene to Disease4680
BioCentury BCIQCEACAM6
ClinGenCEACAM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4680
Chemical/Pharm GKB GenePA26362
Clinical trialCEACAM6
Miscellaneous
canSAR (ICR)CEACAM6 (select the gene name)
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM6
EVEXCEACAM6
GoPubMedCEACAM6
iHOPCEACAM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:27:54 CEST 2017

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