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CEACAM7 (carcinoembryonic antigen related cell adhesion molecule 7)

Identity

Alias_namesCGM2
carcinoembryonic antigen-related cell adhesion molecule 7
Alias_symbol (synonym)CEA
Other alias
HGNC (Hugo) CEACAM7
LocusID (NCBI) 1087
Atlas_Id 40048
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41673307 and ends at 41688277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEACAM7 (19q13.2) / CEACAM6 (19q13.2)CEACAM7 (19q13.2) / STIP1 (11q13.1)TSHZ3 (19q12) / CEACAM7 (19q13.2)
ZFP30 (19q13.12) / CEACAM7 (19q13.2)TSHZ3 19q12 / CEACAM7 19q13.2ZFP30 19q13.12 / CEACAM7 19q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(19;19)(q12;q13) TSHZ3/CEACAM7
CEACAM7/CEACAM6 (19q13)
ZFP30/CEACAM7 (19q13)


External links

Nomenclature
HGNC (Hugo)CEACAM7   1819
Cards
Entrez_Gene (NCBI)CEACAM7  1087  carcinoembryonic antigen related cell adhesion molecule 7
AliasesCGM2
GeneCards (Weizmann)CEACAM7
Ensembl hg19 (Hinxton)ENSG00000007306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007306 [Gene_View]  ENSG00000007306 [Sequence]  chr19:41673307-41688277 [Contig_View]  CEACAM7 [Vega]
ICGC DataPortalENSG00000007306
TCGA cBioPortalCEACAM7
AceView (NCBI)CEACAM7
Genatlas (Paris)CEACAM7
WikiGenes1087
SOURCE (Princeton)CEACAM7
Genetics Home Reference (NIH)CEACAM7
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM7  -     chr19:41673307-41688277 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM7  -     19q13.2   [Description]    (hg19-Feb_2009)
CEACAM7 - 19q13.2 [CytoView hg19]  CEACAM7 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICEACAM7 [Mapview hg19]  CEACAM7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF006622 AF006623 AK292213 AK296634 AK311285
RefSeq transcript (Entrez)NM_001291485 NM_006890
RefSeq genomic (Entrez)NC_000019 NT_187620
Consensus coding sequences : CCDS (NCBI)CEACAM7
Cluster EST : UnigeneHs.74466 [ NCBI ]
CGAP (NCI)Hs.74466
Alternative Splicing GalleryENSG00000007306
Gene ExpressionCEACAM7 [ NCBI-GEO ]   CEACAM7 [ EBI - ARRAY_EXPRESS ]   CEACAM7 [ SEEK ]   CEACAM7 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1087
GTEX Portal (Tissue expression)CEACAM7
Human Protein AtlasENSG00000007306-CEACAM7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14002   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14002  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14002
Splice isoforms : SwissVarQ14002
PhosPhoSitePlusQ14002
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CEACAM7
DMDM Disease mutations1087
Blocks (Seattle)CEACAM7
PDB (RSDB)4Y89   
PDB Europe4Y89   
PDB (PDBSum)4Y89   
PDB (IMB)4Y89   
Structural Biology KnowledgeBase4Y89   
SCOP (Structural Classification of Proteins)4Y89   
CATH (Classification of proteins structures)4Y89   
SuperfamilyQ14002
Human Protein Atlas [tissue]ENSG00000007306-CEACAM7 [tissue]
Peptide AtlasQ14002
HPRD07629
IPIIPI00028270   IPI00216610   IPI01010269   
Protein Interaction databases
DIP (DOE-UCLA)Q14002
IntAct (EBI)Q14002
FunCoupENSG00000007306
BioGRIDCEACAM7
STRING (EMBL)CEACAM7
ZODIACCEACAM7
Ontologies - Pathways
QuickGOQ14002
Ontology : AmiGOextracellular region  plasma membrane  apical plasma membrane  anchored component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  apical plasma membrane  anchored component of membrane  
NDEx NetworkCEACAM7
Atlas of Cancer Signalling NetworkCEACAM7
Wikipedia pathwaysCEACAM7
Orthology - Evolution
OrthoDB1087
GeneTree (enSembl)ENSG00000007306
Phylogenetic Trees/Animal Genes : TreeFamCEACAM7
HOGENOMQ14002
Homologs : HomoloGeneCEACAM7
Homology/Alignments : Family Browser (UCSC)CEACAM7
Gene fusions - Rearrangements
Fusion : MitelmanTSHZ3/CEACAM7 [19q12/19q13.2]  [t(19;19)(q12;q13)]  
Fusion : MitelmanZFP30/CEACAM7 [19q13.12/19q13.2]  [t(19;19)(q13;q13)]  
Fusion PortalTSHZ3 19q12 CEACAM7 19q13.2 LGG
Fusion PortalZFP30 19q13.12 CEACAM7 19q13.2 BLCA
Fusion : QuiverCEACAM7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM7
dbVarCEACAM7
ClinVarCEACAM7
1000_GenomesCEACAM7 
Exome Variant ServerCEACAM7
ExAC (Exome Aggregation Consortium)ENSG00000007306
GNOMAD BrowserENSG00000007306
Varsome BrowserCEACAM7
Genetic variants : HAPMAP1087
Genomic Variants (DGV)CEACAM7 [DGVbeta]
DECIPHERCEACAM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM7 
Mutations
ICGC Data PortalCEACAM7 
TCGA Data PortalCEACAM7 
Broad Tumor PortalCEACAM7
OASIS PortalCEACAM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM7
DgiDB (Drug Gene Interaction Database)CEACAM7
DoCM (Curated mutations)CEACAM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM7 (select a term)
intoGenCEACAM7
Cancer3DCEACAM7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCEACAM7
MedgenCEACAM7
Genetic Testing Registry CEACAM7
NextProtQ14002 [Medical]
TSGene1087
GENETestsCEACAM7
Target ValidationCEACAM7
Huge Navigator CEACAM7 [HugePedia]
snp3D : Map Gene to Disease1087
BioCentury BCIQCEACAM7
ClinGenCEACAM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1087
Chemical/Pharm GKB GenePA26363
Clinical trialCEACAM7
Miscellaneous
canSAR (ICR)CEACAM7 (select the gene name)
DataMed IndexCEACAM7
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM7
EVEXCEACAM7
GoPubMedCEACAM7
iHOPCEACAM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu May 2 12:43:15 CEST 2019

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