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CEBPD (CCAAT/enhancer binding protein delta)

Identity

Alias_namesCCAAT/enhancer binding protein (C/EBP)
Alias_symbol (synonym)CRP3
CELF
C/EBP-delta
NF-IL6-beta
Other alias
HGNC (Hugo) CEBPD
LocusID (NCBI) 1052
Atlas_Id 42983
Location 8q11.21  [Link to chromosome band 8q11]
Location_base_pair Starts at 48649476 and ends at 48650726 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGH (14q32.33) / CEBPD (8q11.21)IGHG1 (14q32.33) / CEBPD (8q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(8;14)(q11;q32) IGH/CEBPD
t(14;14)(q11;q32) CEBPE/IGH::inv(14)(q11q32) CEBPE/IGH
t(14;19)(q32;q13) IGH/CEBPA
t(14;20)(q32;q13) IGH/CEBPB


External links

Nomenclature
HGNC (Hugo)CEBPD   1835
Cards
Entrez_Gene (NCBI)CEBPD  1052  CCAAT/enhancer binding protein delta
AliasesC/EBP-delta; CELF; CRP3; NF-IL6-beta
GeneCards (Weizmann)CEBPD
Ensembl hg19 (Hinxton)ENSG00000221869 [Gene_View]  chr8:48649476-48650726 [Contig_View]  CEBPD [Vega]
Ensembl hg38 (Hinxton)ENSG00000221869 [Gene_View]  chr8:48649476-48650726 [Contig_View]  CEBPD [Vega]
ICGC DataPortalENSG00000221869
TCGA cBioPortalCEBPD
AceView (NCBI)CEBPD
Genatlas (Paris)CEBPD
WikiGenes1052
SOURCE (Princeton)CEBPD
Genetics Home Reference (NIH)CEBPD
Genomic and cartography
GoldenPath hg19 (UCSC)CEBPD  -     chr8:48649476-48650726 -  8q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CEBPD  -     8q11.21   [Description]    (hg38-Dec_2013)
EnsemblCEBPD - 8q11.21 [CytoView hg19]  CEBPD - 8q11.21 [CytoView hg38]
Mapping of homologs : NCBICEBPD [Mapview hg19]  CEBPD [Mapview hg38]
OMIM116898   
Gene and transcription
Genbank (Entrez)BC094715 BC105109 BQ773696 EU831483 EU831570
RefSeq transcript (Entrez)NM_005195
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)CEBPD
Cluster EST : UnigeneHs.440829 [ NCBI ]
CGAP (NCI)Hs.440829
Alternative Splicing GalleryENSG00000221869
Gene ExpressionCEBPD [ NCBI-GEO ]   CEBPD [ EBI - ARRAY_EXPRESS ]   CEBPD [ SEEK ]   CEBPD [ MEM ]
Gene Expression Viewer (FireBrowse)CEBPD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1052
GTEX Portal (Tissue expression)CEBPD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49716   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49716  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49716
Splice isoforms : SwissVarP49716
PhosPhoSitePlusP49716
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)   
Domains : Interpro (EBI)bZIP    C/EBP    C/EBP_chordates   
Domain families : Pfam (Sanger)bZIP_2 (PF07716)   
Domain families : Pfam (NCBI)pfam07716   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)CEBPD
DMDM Disease mutations1052
Blocks (Seattle)CEBPD
SuperfamilyP49716
Human Protein AtlasENSG00000221869
Peptide AtlasP49716
HPRD00297
IPIIPI00292026   IPI00845445   
Protein Interaction databases
DIP (DOE-UCLA)P49716
IntAct (EBI)P49716
FunCoupENSG00000221869
BioGRIDCEBPD
STRING (EMBL)CEBPD
ZODIACCEBPD
Ontologies - Pathways
QuickGOP49716
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCEBPD
Atlas of Cancer Signalling NetworkCEBPD
Wikipedia pathwaysCEBPD
Orthology - Evolution
OrthoDB1052
GeneTree (enSembl)ENSG00000221869
Phylogenetic Trees/Animal Genes : TreeFamCEBPD
HOVERGENP49716
HOGENOMP49716
Homologs : HomoloGeneCEBPD
Homology/Alignments : Family Browser (UCSC)CEBPD
Gene fusions - Rearrangements
Fusion : MitelmanIGH/CEBPD [14q32.33/8q11.21]  [t(8;14)(q11;q32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEBPD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEBPD
dbVarCEBPD
ClinVarCEBPD
1000_GenomesCEBPD 
Exome Variant ServerCEBPD
ExAC (Exome Aggregation Consortium)CEBPD (select the gene name)
Genetic variants : HAPMAP1052
Genomic Variants (DGV)CEBPD [DGVbeta]
DECIPHER (Syndromes)8:48649476-48650726  ENSG00000221869
CONAN: Copy Number AnalysisCEBPD 
Mutations
ICGC Data PortalCEBPD 
TCGA Data PortalCEBPD 
Broad Tumor PortalCEBPD
OASIS PortalCEBPD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEBPD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEBPD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEBPD
DgiDB (Drug Gene Interaction Database)CEBPD
DoCM (Curated mutations)CEBPD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEBPD (select a term)
intoGenCEBPD
Cancer3DCEBPD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM116898   
Orphanet
MedgenCEBPD
Genetic Testing Registry CEBPD
NextProtP49716 [Medical]
TSGene1052
GENETestsCEBPD
Huge Navigator CEBPD [HugePedia]
snp3D : Map Gene to Disease1052
BioCentury BCIQCEBPD
ClinGenCEBPD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1052
Chemical/Pharm GKB GenePA26378
Clinical trialCEBPD
Miscellaneous
canSAR (ICR)CEBPD (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEBPD
EVEXCEBPD
GoPubMedCEBPD
iHOPCEBPD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:06 CEST 2017

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