Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEBPG (CCAAT/enhancer binding protein gamma)

Identity

Alias_namesCCAAT/enhancer binding protein (C/EBP)
Alias_symbol (synonym)GPE1BP
IG/EBP-1
Other alias
HGNC (Hugo) CEBPG
LocusID (NCBI) 1054
Atlas_Id 46095
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33374524 and ends at 33382686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEBPG (19q13.11) / TDRD12 (19q13.11)IGH (14q32.33) / CEBPG (19q13.11)IGHG1 (14q32.33) / CEBPG (19q13.11)
CEBPG 19q13.11 / TDRD12 19q13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEBPG   1837
Cards
Entrez_Gene (NCBI)CEBPG  1054  CCAAT/enhancer binding protein gamma
AliasesGPE1BP; IG/EBP-1
GeneCards (Weizmann)CEBPG
Ensembl hg19 (Hinxton)ENSG00000153879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153879 [Gene_View]  chr19:33374524-33382686 [Contig_View]  CEBPG [Vega]
ICGC DataPortalENSG00000153879
TCGA cBioPortalCEBPG
AceView (NCBI)CEBPG
Genatlas (Paris)CEBPG
WikiGenes1054
SOURCE (Princeton)CEBPG
Genetics Home Reference (NIH)CEBPG
Genomic and cartography
GoldenPath hg38 (UCSC)CEBPG  -     chr19:33374524-33382686 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEBPG  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblCEBPG - 19q13.11 [CytoView hg19]  CEBPG - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBICEBPG [Mapview hg19]  CEBPG [Mapview hg38]
OMIM138972   
Gene and transcription
Genbank (Entrez)AK313634 BC007582 BC013128 BT019819 BT019820
RefSeq transcript (Entrez)NM_001252296 NM_001806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEBPG
Cluster EST : UnigeneHs.429666 [ NCBI ]
CGAP (NCI)Hs.429666
Alternative Splicing GalleryENSG00000153879
Gene ExpressionCEBPG [ NCBI-GEO ]   CEBPG [ EBI - ARRAY_EXPRESS ]   CEBPG [ SEEK ]   CEBPG [ MEM ]
Gene Expression Viewer (FireBrowse)CEBPG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1054
GTEX Portal (Tissue expression)CEBPG
Human Protein AtlasENSG00000153879-CEBPG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53567
Splice isoforms : SwissVarP53567
PhosPhoSitePlusP53567
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)   
Domains : Interpro (EBI)bZIP   
Domain families : Pfam (Sanger)bZIP_2 (PF07716)   
Domain families : Pfam (NCBI)pfam07716   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)CEBPG
DMDM Disease mutations1054
Blocks (Seattle)CEBPG
SuperfamilyP53567
Human Protein Atlas [tissue]ENSG00000153879-CEBPG [tissue]
Peptide AtlasP53567
HPRD00738
IPIIPI00022208   
Protein Interaction databases
DIP (DOE-UCLA)P53567
IntAct (EBI)P53567
FunCoupENSG00000153879
BioGRIDCEBPG
STRING (EMBL)CEBPG
ZODIACCEBPG
Ontologies - Pathways
QuickGOP53567
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  liver development  DNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  immune response  transcription factor binding  mRNA metabolic process  B cell differentiation  natural killer cell mediated cytotoxicity  protein homodimerization activity  enucleate erythrocyte differentiation  positive regulation of DNA binding  negative regulation of sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending  positive regulation of interferon-gamma biosynthetic process  positive regulation of DNA repair  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  liver development  DNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  immune response  transcription factor binding  mRNA metabolic process  B cell differentiation  natural killer cell mediated cytotoxicity  protein homodimerization activity  enucleate erythrocyte differentiation  positive regulation of DNA binding  negative regulation of sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending  positive regulation of interferon-gamma biosynthetic process  positive regulation of DNA repair  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of sequence-specific DNA binding transcription factor activity  
Pathways : KEGGTuberculosis   
NDEx NetworkCEBPG
Atlas of Cancer Signalling NetworkCEBPG
Wikipedia pathwaysCEBPG
Orthology - Evolution
OrthoDB1054
GeneTree (enSembl)ENSG00000153879
Phylogenetic Trees/Animal Genes : TreeFamCEBPG
HOVERGENP53567
HOGENOMP53567
Homologs : HomoloGeneCEBPG
Homology/Alignments : Family Browser (UCSC)CEBPG
Gene fusions - Rearrangements
Fusion : MitelmanCEBPG/TDRD12 [19q13.11/19q13.11]  
Fusion : MitelmanIGH/CEBPG [14q32.33/19q13.11]  [t(14;19)(q32;q13)]  
Fusion: TCGA_MDACCCEBPG 19q13.11 TDRD12 19q13.11 BLCA
Tumor Fusion PortalCEBPG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEBPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEBPG
dbVarCEBPG
ClinVarCEBPG
1000_GenomesCEBPG 
Exome Variant ServerCEBPG
ExAC (Exome Aggregation Consortium)ENSG00000153879
GNOMAD BrowserENSG00000153879
Genetic variants : HAPMAP1054
Genomic Variants (DGV)CEBPG [DGVbeta]
DECIPHERCEBPG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEBPG 
Mutations
ICGC Data PortalCEBPG 
TCGA Data PortalCEBPG 
Broad Tumor PortalCEBPG
OASIS PortalCEBPG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEBPG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEBPG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEBPG
DgiDB (Drug Gene Interaction Database)CEBPG
DoCM (Curated mutations)CEBPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEBPG (select a term)
intoGenCEBPG
Cancer3DCEBPG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138972   
Orphanet
DisGeNETCEBPG
MedgenCEBPG
Genetic Testing Registry CEBPG
NextProtP53567 [Medical]
TSGene1054
GENETestsCEBPG
Target ValidationCEBPG
Huge Navigator CEBPG [HugePedia]
snp3D : Map Gene to Disease1054
BioCentury BCIQCEBPG
ClinGenCEBPG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1054
Chemical/Pharm GKB GenePA26380
Clinical trialCEBPG
Miscellaneous
canSAR (ICR)CEBPG (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEBPG
EVEXCEBPG
GoPubMedCEBPG
iHOPCEBPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:07:15 CET 2017

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