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CEBPZ (CCAAT/enhancer binding protein zeta)

Identity

Alias_namesCCAAT/enhancer binding protein (C/EBP), zeta
CCAAT/enhancer binding proteincebp* family zeta
Alias_symbol (synonym)CBF2
CTF2
Other aliasCBF
HSP-CBF
NOC1
HGNC (Hugo) CEBPZ
LocusID (NCBI) 10153
Atlas_Id 52371
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 37428775 and ends at 37458740 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEBPZ (2p22.2) / ECD (10q22.1)CEBPZ (2p22.2) / FUS (16p11.2)CEBPZ (2p22.2) / KRT19 (17q21.2)
CEBPZ (2p22.2) / MYH11 (16p13.11)EIF2AK2 (2p22.2) / CEBPZ (2p22.2)FUS (16p11.2) / CEBPZ (2p22.2)
EIF2AK2 2p22.2 / CEBPZ 2p22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEBPZ   24218
Cards
Entrez_Gene (NCBI)CEBPZ  10153  CCAAT/enhancer binding protein zeta
AliasesCBF; CBF2; HSP-CBF; NOC1
GeneCards (Weizmann)CEBPZ
Ensembl hg19 (Hinxton)ENSG00000115816 [Gene_View]  chr2:37428775-37458740 [Contig_View]  CEBPZ [Vega]
Ensembl hg38 (Hinxton)ENSG00000115816 [Gene_View]  chr2:37428775-37458740 [Contig_View]  CEBPZ [Vega]
ICGC DataPortalENSG00000115816
TCGA cBioPortalCEBPZ
AceView (NCBI)CEBPZ
Genatlas (Paris)CEBPZ
WikiGenes10153
SOURCE (Princeton)CEBPZ
Genetics Home Reference (NIH)CEBPZ
Genomic and cartography
GoldenPath hg19 (UCSC)CEBPZ  -     chr2:37428775-37458740 -  2p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CEBPZ  -     2p22.2   [Description]    (hg38-Dec_2013)
EnsemblCEBPZ - 2p22.2 [CytoView hg19]  CEBPZ - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBICEBPZ [Mapview hg19]  CEBPZ [Mapview hg38]
OMIM612828   
Gene and transcription
Genbank (Entrez)AK312322 BC034475 M37197
RefSeq transcript (Entrez)NM_005760
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)CEBPZ
Cluster EST : UnigeneHs.135406 [ NCBI ]
CGAP (NCI)Hs.135406
Alternative Splicing GalleryENSG00000115816
Gene ExpressionCEBPZ [ NCBI-GEO ]   CEBPZ [ EBI - ARRAY_EXPRESS ]   CEBPZ [ SEEK ]   CEBPZ [ MEM ]
Gene Expression Viewer (FireBrowse)CEBPZ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10153
GTEX Portal (Tissue expression)CEBPZ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03701   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03701  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03701
Splice isoforms : SwissVarQ03701
PhosPhoSitePlusQ03701
Domains : Interpro (EBI)ARM-type_fold    CCAAT-binding_factor   
Domain families : Pfam (Sanger)CBF (PF03914)   
Domain families : Pfam (NCBI)pfam03914   
Conserved Domain (NCBI)CEBPZ
DMDM Disease mutations10153
Blocks (Seattle)CEBPZ
SuperfamilyQ03701
Human Protein AtlasENSG00000115816
Peptide AtlasQ03701
HPRD09875
IPIIPI00306723   IPI00893383   
Protein Interaction databases
DIP (DOE-UCLA)Q03701
IntAct (EBI)Q03701
FunCoupENSG00000115816
BioGRIDCEBPZ
STRING (EMBL)CEBPZ
ZODIACCEBPZ
Ontologies - Pathways
QuickGOQ03701
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  transcription from RNA polymerase II promoter  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  transcription from RNA polymerase II promoter  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCEBPZ
Atlas of Cancer Signalling NetworkCEBPZ
Wikipedia pathwaysCEBPZ
Orthology - Evolution
OrthoDB10153
GeneTree (enSembl)ENSG00000115816
Phylogenetic Trees/Animal Genes : TreeFamCEBPZ
HOVERGENQ03701
HOGENOMQ03701
Homologs : HomoloGeneCEBPZ
Homology/Alignments : Family Browser (UCSC)CEBPZ
Gene fusions - Rearrangements
Fusion : MitelmanEIF2AK2/CEBPZ [2p22.2/2p22.2]  [t(2;2)(p22;p22)]  
Fusion: TCGAEIF2AK2 2p22.2 CEBPZ 2p22.2 BLCA BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEBPZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEBPZ
dbVarCEBPZ
ClinVarCEBPZ
1000_GenomesCEBPZ 
Exome Variant ServerCEBPZ
ExAC (Exome Aggregation Consortium)CEBPZ (select the gene name)
Genetic variants : HAPMAP10153
Genomic Variants (DGV)CEBPZ [DGVbeta]
DECIPHER (Syndromes)2:37428775-37458740  ENSG00000115816
CONAN: Copy Number AnalysisCEBPZ 
Mutations
ICGC Data PortalCEBPZ 
TCGA Data PortalCEBPZ 
Broad Tumor PortalCEBPZ
OASIS PortalCEBPZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEBPZ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEBPZ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEBPZ
DgiDB (Drug Gene Interaction Database)CEBPZ
DoCM (Curated mutations)CEBPZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEBPZ (select a term)
intoGenCEBPZ
Cancer3DCEBPZ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612828   
Orphanet
MedgenCEBPZ
Genetic Testing Registry CEBPZ
NextProtQ03701 [Medical]
TSGene10153
GENETestsCEBPZ
Huge Navigator CEBPZ [HugePedia]
snp3D : Map Gene to Disease10153
BioCentury BCIQCEBPZ
ClinGenCEBPZ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10153
Chemical/Pharm GKB GenePA134977051
Clinical trialCEBPZ
Miscellaneous
canSAR (ICR)CEBPZ (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEBPZ
EVEXCEBPZ
GoPubMedCEBPZ
iHOPCEBPZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:06 CEST 2017

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