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CECR6 (cat eye syndrome chromosome region, candidate 6)

Identity

Other alias-
HGNC (Hugo) CECR6
LocusID (NCBI) 27439
Atlas_Id 61687
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 17116299 and ends at 17121367 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CECR6   1844
Cards
Entrez_Gene (NCBI)CECR6  27439  cat eye syndrome chromosome region, candidate 6
Aliases
GeneCards (Weizmann)CECR6
Ensembl hg19 (Hinxton)ENSG00000183307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183307 [Gene_View]  chr22:17116299-17121367 [Contig_View]  CECR6 [Vega]
ICGC DataPortalENSG00000183307
TCGA cBioPortalCECR6
AceView (NCBI)CECR6
Genatlas (Paris)CECR6
WikiGenes27439
SOURCE (Princeton)CECR6
Genetics Home Reference (NIH)CECR6
Genomic and cartography
GoldenPath hg38 (UCSC)CECR6  -     chr22:17116299-17121367 -  22q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CECR6  -     22q11.1   [Description]    (hg19-Feb_2009)
EnsemblCECR6 - 22q11.1 [CytoView hg19]  CECR6 - 22q11.1 [CytoView hg38]
Mapping of homologs : NCBICECR6 [Mapview hg19]  CECR6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF307451 AK055398 AK095437 AK095609 BG472529
RefSeq transcript (Entrez)NM_001163079 NM_031890
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CECR6
Cluster EST : UnigeneHs.209577 [ NCBI ]
CGAP (NCI)Hs.209577
Alternative Splicing GalleryENSG00000183307
Gene ExpressionCECR6 [ NCBI-GEO ]   CECR6 [ EBI - ARRAY_EXPRESS ]   CECR6 [ SEEK ]   CECR6 [ MEM ]
Gene Expression Viewer (FireBrowse)CECR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27439
GTEX Portal (Tissue expression)CECR6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXQ6
Splice isoforms : SwissVarQ9BXQ6
PhosPhoSitePlusQ9BXQ6
Domains : Interpro (EBI)CECR6    CECR6/TMEM121   
Domain families : Pfam (Sanger)CECR6_TMEM121 (PF14997)   
Domain families : Pfam (NCBI)pfam14997   
Conserved Domain (NCBI)CECR6
DMDM Disease mutations27439
Blocks (Seattle)CECR6
SuperfamilyQ9BXQ6
Human Protein AtlasENSG00000183307
Peptide AtlasQ9BXQ6
HPRD16704
IPIIPI00010832   IPI00853127   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXQ6
IntAct (EBI)Q9BXQ6
FunCoupENSG00000183307
BioGRIDCECR6
STRING (EMBL)CECR6
ZODIACCECR6
Ontologies - Pathways
QuickGOQ9BXQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCECR6
Atlas of Cancer Signalling NetworkCECR6
Wikipedia pathwaysCECR6
Orthology - Evolution
OrthoDB27439
GeneTree (enSembl)ENSG00000183307
Phylogenetic Trees/Animal Genes : TreeFamCECR6
HOVERGENQ9BXQ6
HOGENOMQ9BXQ6
Homologs : HomoloGeneCECR6
Homology/Alignments : Family Browser (UCSC)CECR6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCECR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CECR6
dbVarCECR6
ClinVarCECR6
1000_GenomesCECR6 
Exome Variant ServerCECR6
ExAC (Exome Aggregation Consortium)CECR6 (select the gene name)
Genetic variants : HAPMAP27439
Genomic Variants (DGV)CECR6 [DGVbeta]
DECIPHERCECR6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCECR6 
Mutations
ICGC Data PortalCECR6 
TCGA Data PortalCECR6 
Broad Tumor PortalCECR6
OASIS PortalCECR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCECR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCECR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CECR6
DgiDB (Drug Gene Interaction Database)CECR6
DoCM (Curated mutations)CECR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CECR6 (select a term)
intoGenCECR6
Cancer3DCECR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCECR6
Genetic Testing Registry CECR6
NextProtQ9BXQ6 [Medical]
TSGene27439
GENETestsCECR6
Target ValidationCECR6
Huge Navigator CECR6 [HugePedia]
snp3D : Map Gene to Disease27439
BioCentury BCIQCECR6
ClinGenCECR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27439
Chemical/Pharm GKB GenePA26387
Clinical trialCECR6
Miscellaneous
canSAR (ICR)CECR6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCECR6
EVEXCECR6
GoPubMedCECR6
iHOPCECR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:07 CEST 2017

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