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CECR9 (cat eye syndrome chromosome region, candidate 9 (non-protein coding))

Identity

Alias_namescat eye syndrome chromosome region, candidate 9
Other alias-
HGNC (Hugo) CECR9
LocusID (NCBI) 30847
Atlas_Id 61689
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 17329034 and ends at 17329232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CECR9   1847
Cards
Entrez_Gene (NCBI)CECR9  30847  cat eye syndrome chromosome region, candidate 9 (non-protein coding)
Aliases
GeneCards (Weizmann)CECR9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:17329034-17329232 [Contig_View]  CECR9 [Vega]
TCGA cBioPortalCECR9
AceView (NCBI)CECR9
Genatlas (Paris)CECR9
WikiGenes30847
SOURCE (Princeton)CECR9
Genetics Home Reference (NIH)CECR9
Genomic and cartography
GoldenPath hg38 (UCSC)CECR9  -     chr22:17329034-17329232 +  22q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CECR9  -     22q11.1   [Description]    (hg19-Feb_2009)
EnsemblCECR9 - 22q11.1 [CytoView hg19]  CECR9 - 22q11.1 [CytoView hg38]
Mapping of homologs : NCBICECR9 [Mapview hg19]  CECR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF307449
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CECR9
Cluster EST : UnigeneHs.542791 [ NCBI ]
CGAP (NCI)Hs.542791
Gene ExpressionCECR9 [ NCBI-GEO ]   CECR9 [ EBI - ARRAY_EXPRESS ]   CECR9 [ SEEK ]   CECR9 [ MEM ]
Gene Expression Viewer (FireBrowse)CECR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30847
GTEX Portal (Tissue expression)CECR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C854   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C854  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C854
Splice isoforms : SwissVarP0C854
PhosPhoSitePlusP0C854
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CECR9
DMDM Disease mutations30847
Blocks (Seattle)CECR9
SuperfamilyP0C854
Peptide AtlasP0C854
IPIIPI00902847   
Protein Interaction databases
DIP (DOE-UCLA)P0C854
IntAct (EBI)P0C854
BioGRIDCECR9
STRING (EMBL)CECR9
ZODIACCECR9
Ontologies - Pathways
QuickGOP0C854
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCECR9
Atlas of Cancer Signalling NetworkCECR9
Wikipedia pathwaysCECR9
Orthology - Evolution
OrthoDB30847
Phylogenetic Trees/Animal Genes : TreeFamCECR9
HOVERGENP0C854
HOGENOMP0C854
Homologs : HomoloGeneCECR9
Homology/Alignments : Family Browser (UCSC)CECR9
Gene fusions - Rearrangements
Tumor Fusion PortalCECR9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCECR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CECR9
dbVarCECR9
ClinVarCECR9
1000_GenomesCECR9 
Exome Variant ServerCECR9
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP30847
Genomic Variants (DGV)CECR9 [DGVbeta]
DECIPHERCECR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCECR9 
Mutations
ICGC Data PortalCECR9 
TCGA Data PortalCECR9 
Broad Tumor PortalCECR9
OASIS PortalCECR9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCECR9
BioMutasearch CECR9
DgiDB (Drug Gene Interaction Database)CECR9
DoCM (Curated mutations)CECR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CECR9 (select a term)
intoGenCECR9
Cancer3DCECR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCECR9
MedgenCECR9
Genetic Testing Registry CECR9
NextProtP0C854 [Medical]
TSGe.e30847
GENETestsCECR9
Target ValidationCECR9
Huge Navigator CECR9 [HugePedia]
snp3D : Map Gene to Disease30847
BioCentury BCIQCECR9
ClinGenCECR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30847
Chemical/Pharm GKB GenePA26390
Clinical trialCECR9
Miscellaneous
canSAR (ICR)CECR9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCECR9
EVEXCECR9
GoPubMedCECR9
iHOPCECR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:31 CET 2017

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