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CELF2-AS1 (CELF2 antisense RNA 1)

Identity

Alias_namesC10orf31
chromosome 10 open reading frame 31
CELF2 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ40494
Em:AC026887.2
Other alias
HGNC (Hugo) CELF2-AS1
LocusID (NCBI) 414196
Atlas_Id 61693
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11317699 and ends at 11319884 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CELF2-AS1   23515
Cards
Entrez_Gene (NCBI)CELF2-AS1  414196  CELF2 antisense RNA 1
AliasesC10orf31
GeneCards (Weizmann)CELF2-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:11317699-11319884 [Contig_View]  CELF2-AS1 [Vega]
TCGA cBioPortalCELF2-AS1
AceView (NCBI)CELF2-AS1
Genatlas (Paris)CELF2-AS1
WikiGenes414196
SOURCE (Princeton)CELF2-AS1
Genetics Home Reference (NIH)CELF2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CELF2-AS1  -     chr10:11317699-11319884 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CELF2-AS1  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblCELF2-AS1 - 10p14 [CytoView hg19]  CELF2-AS1 - 10p14 [CytoView hg38]
Mapping of homologs : NCBICELF2-AS1 [Mapview hg19]  CELF2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097813 DB072070 HY033067
RefSeq transcript (Entrez)NM_001012713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CELF2-AS1
Cluster EST : UnigeneHs.729598 [ NCBI ]
CGAP (NCI)Hs.729598
Gene ExpressionCELF2-AS1 [ NCBI-GEO ]   CELF2-AS1 [ EBI - ARRAY_EXPRESS ]   CELF2-AS1 [ SEEK ]   CELF2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CELF2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414196
GTEX Portal (Tissue expression)CELF2-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7Q2
Splice isoforms : SwissVarQ8N7Q2
PhosPhoSitePlusQ8N7Q2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CELF2-AS1
DMDM Disease mutations414196
Blocks (Seattle)CELF2-AS1
SuperfamilyQ8N7Q2
Peptide AtlasQ8N7Q2
HPRD18529
IPIIPI00297876   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7Q2
IntAct (EBI)Q8N7Q2
BioGRIDCELF2-AS1
STRING (EMBL)CELF2-AS1
ZODIACCELF2-AS1
Ontologies - Pathways
QuickGOQ8N7Q2
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCELF2-AS1
Atlas of Cancer Signalling NetworkCELF2-AS1
Wikipedia pathwaysCELF2-AS1
Orthology - Evolution
OrthoDB414196
Phylogenetic Trees/Animal Genes : TreeFamCELF2-AS1
HOVERGENQ8N7Q2
HOGENOMQ8N7Q2
Homologs : HomoloGeneCELF2-AS1
Homology/Alignments : Family Browser (UCSC)CELF2-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCELF2-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CELF2-AS1
dbVarCELF2-AS1
ClinVarCELF2-AS1
1000_GenomesCELF2-AS1 
Exome Variant ServerCELF2-AS1
ExAC (Exome Aggregation Consortium)CELF2-AS1 (select the gene name)
Genetic variants : HAPMAP414196
Genomic Variants (DGV)CELF2-AS1 [DGVbeta]
DECIPHERCELF2-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCELF2-AS1 
Mutations
ICGC Data PortalCELF2-AS1 
TCGA Data PortalCELF2-AS1 
Broad Tumor PortalCELF2-AS1
OASIS PortalCELF2-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCELF2-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CELF2-AS1
DgiDB (Drug Gene Interaction Database)CELF2-AS1
DoCM (Curated mutations)CELF2-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CELF2-AS1 (select a term)
intoGenCELF2-AS1
Cancer3DCELF2-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCELF2-AS1
Genetic Testing Registry CELF2-AS1
NextProtQ8N7Q2 [Medical]
TSGene414196
GENETestsCELF2-AS1
Huge Navigator CELF2-AS1 [HugePedia]
snp3D : Map Gene to Disease414196
BioCentury BCIQCELF2-AS1
ClinGenCELF2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414196
Chemical/Pharm GKB GenePA134878149
Clinical trialCELF2-AS1
Miscellaneous
canSAR (ICR)CELF2-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCELF2-AS1
EVEXCELF2-AS1
GoPubMedCELF2-AS1
iHOPCELF2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:05:26 CEST 2017

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