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CELF5 (CUGBP Elav-like family member 5)

Identity

Alias_namesBRUNOL5
Bruno (Drosophila) -like 5, RNA binding protein
bruno-like 5, RNA binding protein (Drosophila)
Other aliasBRUNOL-5
CELF-5
HGNC (Hugo) CELF5
LocusID (NCBI) 60680
Atlas_Id 61697
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3224704 and ends at 3297075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFIC (19p13.3) / CELF5 (19p13.3)ZMYND8 (20q13.12) / CELF5 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CELF5   14058
Cards
Entrez_Gene (NCBI)CELF5  60680  CUGBP Elav-like family member 5
AliasesBRUNOL-5; BRUNOL5; CELF-5
GeneCards (Weizmann)CELF5
Ensembl hg19 (Hinxton)ENSG00000161082 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161082 [Gene_View]  chr19:3224704-3297075 [Contig_View]  CELF5 [Vega]
ICGC DataPortalENSG00000161082
TCGA cBioPortalCELF5
AceView (NCBI)CELF5
Genatlas (Paris)CELF5
WikiGenes60680
SOURCE (Princeton)CELF5
Genetics Home Reference (NIH)CELF5
Genomic and cartography
GoldenPath hg38 (UCSC)CELF5  -     chr19:3224704-3297075 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CELF5  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCELF5 - 19p13.3 [CytoView hg19]  CELF5 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICELF5 [Mapview hg19]  CELF5 [Mapview hg38]
OMIM612680   
Gene and transcription
Genbank (Entrez)AA448420 AB209067 AF248649 AF329266 AK294109
RefSeq transcript (Entrez)NM_001172673 NM_021938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CELF5
Cluster EST : UnigeneHs.655747 [ NCBI ]
CGAP (NCI)Hs.655747
Alternative Splicing GalleryENSG00000161082
Gene ExpressionCELF5 [ NCBI-GEO ]   CELF5 [ EBI - ARRAY_EXPRESS ]   CELF5 [ SEEK ]   CELF5 [ MEM ]
Gene Expression Viewer (FireBrowse)CELF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60680
GTEX Portal (Tissue expression)CELF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6W0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6W0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6W0
Splice isoforms : SwissVarQ8N6W0
PhosPhoSitePlusQ8N6W0
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CELF5
DMDM Disease mutations60680
Blocks (Seattle)CELF5
PDB (SRS)2DNH   
PDB (PDBSum)2DNH   
PDB (IMB)2DNH   
PDB (RSDB)2DNH   
Structural Biology KnowledgeBase2DNH   
SCOP (Structural Classification of Proteins)2DNH   
CATH (Classification of proteins structures)2DNH   
SuperfamilyQ8N6W0
Human Protein AtlasENSG00000161082
Peptide AtlasQ8N6W0
HPRD12535
IPIIPI00171157   IPI00853054   IPI00645373   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6W0
IntAct (EBI)Q8N6W0
FunCoupENSG00000161082
BioGRIDCELF5
STRING (EMBL)CELF5
ZODIACCELF5
Ontologies - Pathways
QuickGOQ8N6W0
Ontology : AmiGORNA binding  nucleus  cytoplasm  mRNA processing  
Ontology : EGO-EBIRNA binding  nucleus  cytoplasm  mRNA processing  
NDEx NetworkCELF5
Atlas of Cancer Signalling NetworkCELF5
Wikipedia pathwaysCELF5
Orthology - Evolution
OrthoDB60680
GeneTree (enSembl)ENSG00000161082
Phylogenetic Trees/Animal Genes : TreeFamCELF5
HOVERGENQ8N6W0
HOGENOMQ8N6W0
Homologs : HomoloGeneCELF5
Homology/Alignments : Family Browser (UCSC)CELF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCELF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CELF5
dbVarCELF5
ClinVarCELF5
1000_GenomesCELF5 
Exome Variant ServerCELF5
ExAC (Exome Aggregation Consortium)CELF5 (select the gene name)
Genetic variants : HAPMAP60680
Genomic Variants (DGV)CELF5 [DGVbeta]
DECIPHERCELF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCELF5 
Mutations
ICGC Data PortalCELF5 
TCGA Data PortalCELF5 
Broad Tumor PortalCELF5
OASIS PortalCELF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCELF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCELF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CELF5
DgiDB (Drug Gene Interaction Database)CELF5
DoCM (Curated mutations)CELF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CELF5 (select a term)
intoGenCELF5
Cancer3DCELF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612680   
Orphanet
MedgenCELF5
Genetic Testing Registry CELF5
NextProtQ8N6W0 [Medical]
TSGene60680
GENETestsCELF5
Huge Navigator CELF5 [HugePedia]
snp3D : Map Gene to Disease60680
BioCentury BCIQCELF5
ClinGenCELF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60680
Chemical/Pharm GKB GenePA25429
Clinical trialCELF5
Miscellaneous
canSAR (ICR)CELF5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCELF5
EVEXCELF5
GoPubMedCELF5
iHOPCELF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:05:27 CEST 2017

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