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CELF6 (CUGBP Elav-like family member 6)

Identity

Alias_namesBRUNOL6
Bruno (Drosophila) -like 6, RNA binding protein
bruno-like 6, RNA binding protein (Drosophila)
Other alias
HGNC (Hugo) CELF6
LocusID (NCBI) 60677
Atlas_Id 61698
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 72284727 and ends at 72319946 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CELF6 (15q23) / CELF6 (15q23)MYO9A (15q23) / CELF6 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CELF6   14059
Cards
Entrez_Gene (NCBI)CELF6  60677  CUGBP Elav-like family member 6
AliasesBRUNOL6
GeneCards (Weizmann)CELF6
Ensembl hg19 (Hinxton)ENSG00000140488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140488 [Gene_View]  chr15:72284727-72319946 [Contig_View]  CELF6 [Vega]
ICGC DataPortalENSG00000140488
TCGA cBioPortalCELF6
AceView (NCBI)CELF6
Genatlas (Paris)CELF6
WikiGenes60677
SOURCE (Princeton)CELF6
Genetics Home Reference (NIH)CELF6
Genomic and cartography
GoldenPath hg38 (UCSC)CELF6  -     chr15:72284727-72319946 -  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CELF6  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblCELF6 - 15q23 [CytoView hg19]  CELF6 - 15q23 [CytoView hg38]
Mapping of homologs : NCBICELF6 [Mapview hg19]  CELF6 [Mapview hg38]
OMIM612681   
Gene and transcription
Genbank (Entrez)AF401233 AF425606 AK124858 AK131098 AK294382
RefSeq transcript (Entrez)NM_001172684 NM_001172685 NM_052840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CELF6
Cluster EST : UnigeneHs.348342 [ NCBI ]
CGAP (NCI)Hs.348342
Alternative Splicing GalleryENSG00000140488
Gene ExpressionCELF6 [ NCBI-GEO ]   CELF6 [ EBI - ARRAY_EXPRESS ]   CELF6 [ SEEK ]   CELF6 [ MEM ]
Gene Expression Viewer (FireBrowse)CELF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60677
GTEX Portal (Tissue expression)CELF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J87
Splice isoforms : SwissVarQ96J87
PhosPhoSitePlusQ96J87
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CELF6
DMDM Disease mutations60677
Blocks (Seattle)CELF6
PDB (SRS)2DGQ   
PDB (PDBSum)2DGQ   
PDB (IMB)2DGQ   
PDB (RSDB)2DGQ   
Structural Biology KnowledgeBase2DGQ   
SCOP (Structural Classification of Proteins)2DGQ   
CATH (Classification of proteins structures)2DGQ   
SuperfamilyQ96J87
Human Protein AtlasENSG00000140488
Peptide AtlasQ96J87
HPRD10691
IPIIPI00171103   IPI00793692   IPI01012509   IPI00556338   IPI00909307   IPI00922660   
Protein Interaction databases
DIP (DOE-UCLA)Q96J87
IntAct (EBI)Q96J87
FunCoupENSG00000140488
BioGRIDCELF6
STRING (EMBL)CELF6
ZODIACCELF6
Ontologies - Pathways
QuickGOQ96J87
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  RNA binding  nucleus  cytoplasm  cytosol  mRNA processing  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  RNA binding  nucleus  cytoplasm  cytosol  mRNA processing  
NDEx NetworkCELF6
Atlas of Cancer Signalling NetworkCELF6
Wikipedia pathwaysCELF6
Orthology - Evolution
OrthoDB60677
GeneTree (enSembl)ENSG00000140488
Phylogenetic Trees/Animal Genes : TreeFamCELF6
HOVERGENQ96J87
HOGENOMQ96J87
Homologs : HomoloGeneCELF6
Homology/Alignments : Family Browser (UCSC)CELF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCELF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CELF6
dbVarCELF6
ClinVarCELF6
1000_GenomesCELF6 
Exome Variant ServerCELF6
ExAC (Exome Aggregation Consortium)CELF6 (select the gene name)
Genetic variants : HAPMAP60677
Genomic Variants (DGV)CELF6 [DGVbeta]
DECIPHERCELF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCELF6 
Mutations
ICGC Data PortalCELF6 
TCGA Data PortalCELF6 
Broad Tumor PortalCELF6
OASIS PortalCELF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCELF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCELF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CELF6
DgiDB (Drug Gene Interaction Database)CELF6
DoCM (Curated mutations)CELF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CELF6 (select a term)
intoGenCELF6
Cancer3DCELF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612681   
Orphanet
MedgenCELF6
Genetic Testing Registry CELF6
NextProtQ96J87 [Medical]
TSGene60677
GENETestsCELF6
Target ValidationCELF6
Huge Navigator CELF6 [HugePedia]
snp3D : Map Gene to Disease60677
BioCentury BCIQCELF6
ClinGenCELF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60677
Chemical/Pharm GKB GenePA25430
Clinical trialCELF6
Miscellaneous
canSAR (ICR)CELF6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCELF6
EVEXCELF6
GoPubMedCELF6
iHOPCELF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:32 CEST 2017

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