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CEMP1 (cementum protein 1)

Identity

Other aliasCP-23
CP23
HGNC (Hugo) CEMP1
LocusID (NCBI) 752014
Atlas_Id 57156
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2530035 and ends at 2531408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEMP1   32553
Cards
Entrez_Gene (NCBI)CEMP1  752014  cementum protein 1
AliasesCP-23; CP23
GeneCards (Weizmann)CEMP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:2530035-2531408 [Contig_View]  CEMP1 [Vega]
TCGA cBioPortalCEMP1
AceView (NCBI)CEMP1
Genatlas (Paris)CEMP1
WikiGenes752014
SOURCE (Princeton)CEMP1
Genetics Home Reference (NIH)CEMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CEMP1  -     chr16:2530035-2531408 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEMP1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCEMP1 - 16p13.3 [CytoView hg19]  CEMP1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICEMP1 [Mapview hg19]  CEMP1 [Mapview hg38]
OMIM611113   
Gene and transcription
Genbank (Entrez)AY584596 BC146925 BC146926 BC152783 BC156602
RefSeq transcript (Entrez)NM_001048212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEMP1
Cluster EST : UnigeneHs.737156 [ NCBI ]
CGAP (NCI)Hs.737156
Gene ExpressionCEMP1 [ NCBI-GEO ]   CEMP1 [ EBI - ARRAY_EXPRESS ]   CEMP1 [ SEEK ]   CEMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CEMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)752014
GTEX Portal (Tissue expression)CEMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PRD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PRD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PRD7
Splice isoforms : SwissVarQ6PRD7
PhosPhoSitePlusQ6PRD7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CEMP1
DMDM Disease mutations752014
Blocks (Seattle)CEMP1
SuperfamilyQ6PRD7
Peptide AtlasQ6PRD7
IPIIPI00450761   
Protein Interaction databases
DIP (DOE-UCLA)Q6PRD7
IntAct (EBI)Q6PRD7
BioGRIDCEMP1
STRING (EMBL)CEMP1
ZODIACCEMP1
Ontologies - Pathways
QuickGOQ6PRD7
Ontology : AmiGOnucleus  cytoplasm  cell proliferation  cell differentiation  biomineral tissue development  odontogenesis  hydroxyapatite binding  
Ontology : EGO-EBInucleus  cytoplasm  cell proliferation  cell differentiation  biomineral tissue development  odontogenesis  hydroxyapatite binding  
NDEx NetworkCEMP1
Atlas of Cancer Signalling NetworkCEMP1
Wikipedia pathwaysCEMP1
Orthology - Evolution
OrthoDB752014
Phylogenetic Trees/Animal Genes : TreeFamCEMP1
HOVERGENQ6PRD7
HOGENOMQ6PRD7
Homologs : HomoloGeneCEMP1
Homology/Alignments : Family Browser (UCSC)CEMP1
Gene fusions - Rearrangements
Fusion: Tumor Portal CEMP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEMP1
dbVarCEMP1
ClinVarCEMP1
1000_GenomesCEMP1 
Exome Variant ServerCEMP1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP752014
Genomic Variants (DGV)CEMP1 [DGVbeta]
DECIPHERCEMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEMP1 
Mutations
ICGC Data PortalCEMP1 
TCGA Data PortalCEMP1 
Broad Tumor PortalCEMP1
OASIS PortalCEMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEMP1
BioMutasearch CEMP1
DgiDB (Drug Gene Interaction Database)CEMP1
DoCM (Curated mutations)CEMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEMP1 (select a term)
intoGenCEMP1
Cancer3DCEMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611113   
Orphanet
MedgenCEMP1
Genetic Testing Registry CEMP1
NextProtQ6PRD7 [Medical]
TSGene752014
GENETestsCEMP1
Target ValidationCEMP1
Huge Navigator CEMP1 [HugePedia]
snp3D : Map Gene to Disease752014
BioCentury BCIQCEMP1
ClinGenCEMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD752014
Chemical/Pharm GKB GenePA162382169
Clinical trialCEMP1
Miscellaneous
canSAR (ICR)CEMP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEMP1
EVEXCEMP1
GoPubMedCEMP1
iHOPCEMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:44:19 CET 2017

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