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CENPB (centromere protein B)

Identity

Alias_namescentromere protein B (80kD)
centromere protein B, 80kDa
Other alias-
HGNC (Hugo) CENPB
LocusID (NCBI) 1059
Atlas_Id 43207
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3783851 and ends at 3786690 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPB   1852
Cards
Entrez_Gene (NCBI)CENPB  1059  centromere protein B
Aliases
GeneCards (Weizmann)CENPB
Ensembl hg19 (Hinxton)ENSG00000125817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125817 [Gene_View]  chr20:3783851-3786690 [Contig_View]  CENPB [Vega]
ICGC DataPortalENSG00000125817
TCGA cBioPortalCENPB
AceView (NCBI)CENPB
Genatlas (Paris)CENPB
WikiGenes1059
SOURCE (Princeton)CENPB
Genetics Home Reference (NIH)CENPB
Genomic and cartography
GoldenPath hg38 (UCSC)CENPB  -     chr20:3783851-3786690 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPB  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblCENPB - 20p13 [CytoView hg19]  CENPB - 20p13 [CytoView hg38]
Mapping of homologs : NCBICENPB [Mapview hg19]  CENPB [Mapview hg38]
OMIM117140   
Gene and transcription
Genbank (Entrez)AH005560 BC003649 BC012297 BC021577 BC033658
RefSeq transcript (Entrez)NM_001810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPB
Cluster EST : UnigeneHs.516855 [ NCBI ]
CGAP (NCI)Hs.516855
Alternative Splicing GalleryENSG00000125817
Gene ExpressionCENPB [ NCBI-GEO ]   CENPB [ EBI - ARRAY_EXPRESS ]   CENPB [ SEEK ]   CENPB [ MEM ]
Gene Expression Viewer (FireBrowse)CENPB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1059
GTEX Portal (Tissue expression)CENPB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07199   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07199  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07199
Splice isoforms : SwissVarP07199
PhosPhoSitePlusP07199
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)CENP-B    Centromere_CenpB_dimerisation    DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_dimeris (PF09026)    CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam09026    pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)CENPB
DMDM Disease mutations1059
Blocks (Seattle)CENPB
PDB (SRS)1BW6    1HLV    1UFI   
PDB (PDBSum)1BW6    1HLV    1UFI   
PDB (IMB)1BW6    1HLV    1UFI   
PDB (RSDB)1BW6    1HLV    1UFI   
Structural Biology KnowledgeBase1BW6    1HLV    1UFI   
SCOP (Structural Classification of Proteins)1BW6    1HLV    1UFI   
CATH (Classification of proteins structures)1BW6    1HLV    1UFI   
SuperfamilyP07199
Human Protein AtlasENSG00000125817
Peptide AtlasP07199
HPRD00314
IPIIPI00010388   IPI00976208   
Protein Interaction databases
DIP (DOE-UCLA)P07199
IntAct (EBI)P07199
FunCoupENSG00000125817
BioGRIDCENPB
STRING (EMBL)CENPB
ZODIACCENPB
Ontologies - Pathways
QuickGOP07199
Ontology : AmiGOchromosome, centromeric region  condensed nuclear chromosome, centromeric region  chromatin binding  satellite DNA binding  chromosome  nuclear body  centromeric DNA binding  nuclear pericentric heterochromatin  sequence-specific DNA binding  
Ontology : EGO-EBIchromosome, centromeric region  condensed nuclear chromosome, centromeric region  chromatin binding  satellite DNA binding  chromosome  nuclear body  centromeric DNA binding  nuclear pericentric heterochromatin  sequence-specific DNA binding  
NDEx NetworkCENPB
Atlas of Cancer Signalling NetworkCENPB
Wikipedia pathwaysCENPB
Orthology - Evolution
OrthoDB1059
GeneTree (enSembl)ENSG00000125817
Phylogenetic Trees/Animal Genes : TreeFamCENPB
HOVERGENP07199
HOGENOMP07199
Homologs : HomoloGeneCENPB
Homology/Alignments : Family Browser (UCSC)CENPB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPB
dbVarCENPB
ClinVarCENPB
1000_GenomesCENPB 
Exome Variant ServerCENPB
ExAC (Exome Aggregation Consortium)CENPB (select the gene name)
Genetic variants : HAPMAP1059
Genomic Variants (DGV)CENPB [DGVbeta]
DECIPHERCENPB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPB 
Mutations
ICGC Data PortalCENPB 
TCGA Data PortalCENPB 
Broad Tumor PortalCENPB
OASIS PortalCENPB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPB
DgiDB (Drug Gene Interaction Database)CENPB
DoCM (Curated mutations)CENPB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPB (select a term)
intoGenCENPB
Cancer3DCENPB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM117140   
Orphanet
MedgenCENPB
Genetic Testing Registry CENPB
NextProtP07199 [Medical]
TSGene1059
GENETestsCENPB
Target ValidationCENPB
Huge Navigator CENPB [HugePedia]
snp3D : Map Gene to Disease1059
BioCentury BCIQCENPB
ClinGenCENPB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1059
Chemical/Pharm GKB GenePA26397
Clinical trialCENPB
Miscellaneous
canSAR (ICR)CENPB (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPB
EVEXCENPB
GoPubMedCENPB
iHOPCENPB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:55 CEST 2017

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