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CENPBD1 (CENPB DNA-binding domain containing 1)

Identity

Alias_namesCENPB DNA-binding domains containing 1
Alias_symbol (synonym)MGC16385
Other alias-
HGNC (Hugo) CENPBD1
LocusID (NCBI) 92806
Atlas_Id 61703
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89969775 and ends at 89972832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPBD1 (16q24.3) / LMF1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPBD1   28272
Cards
Entrez_Gene (NCBI)CENPBD1  92806  CENPB DNA-binding domain containing 1
Aliases
GeneCards (Weizmann)CENPBD1
Ensembl hg19 (Hinxton)ENSG00000177946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177946 [Gene_View]  chr16:89969775-89972832 [Contig_View]  CENPBD1 [Vega]
ICGC DataPortalENSG00000177946
TCGA cBioPortalCENPBD1
AceView (NCBI)CENPBD1
Genatlas (Paris)CENPBD1
WikiGenes92806
SOURCE (Princeton)CENPBD1
Genetics Home Reference (NIH)CENPBD1
Genomic and cartography
GoldenPath hg38 (UCSC)CENPBD1  -     chr16:89969775-89972832 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPBD1  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblCENPBD1 - 16q24.3 [CytoView hg19]  CENPBD1 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBICENPBD1 [Mapview hg19]  CENPBD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI039958 AK056131 AK074351 AK315352 AW136311
RefSeq transcript (Entrez)NM_145039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPBD1
Cluster EST : UnigeneHs.733302 [ NCBI ]
CGAP (NCI)Hs.733302
Alternative Splicing GalleryENSG00000177946
Gene ExpressionCENPBD1 [ NCBI-GEO ]   CENPBD1 [ EBI - ARRAY_EXPRESS ]   CENPBD1 [ SEEK ]   CENPBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CENPBD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92806
GTEX Portal (Tissue expression)CENPBD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RD01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RD01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RD01
Splice isoforms : SwissVarB2RD01
PhosPhoSitePlusB2RD01
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03221   
Conserved Domain (NCBI)CENPBD1
DMDM Disease mutations92806
Blocks (Seattle)CENPBD1
SuperfamilyB2RD01
Human Protein AtlasENSG00000177946
Peptide AtlasB2RD01
HPRD08321
IPIIPI00382395   IPI00013423   
Protein Interaction databases
DIP (DOE-UCLA)B2RD01
IntAct (EBI)B2RD01
FunCoupENSG00000177946
BioGRIDCENPBD1
STRING (EMBL)CENPBD1
ZODIACCENPBD1
Ontologies - Pathways
QuickGOB2RD01
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkCENPBD1
Atlas of Cancer Signalling NetworkCENPBD1
Wikipedia pathwaysCENPBD1
Orthology - Evolution
OrthoDB92806
GeneTree (enSembl)ENSG00000177946
Phylogenetic Trees/Animal Genes : TreeFamCENPBD1
HOVERGENB2RD01
HOGENOMB2RD01
Homologs : HomoloGeneCENPBD1
Homology/Alignments : Family Browser (UCSC)CENPBD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPBD1
dbVarCENPBD1
ClinVarCENPBD1
1000_GenomesCENPBD1 
Exome Variant ServerCENPBD1
ExAC (Exome Aggregation Consortium)CENPBD1 (select the gene name)
Genetic variants : HAPMAP92806
Genomic Variants (DGV)CENPBD1 [DGVbeta]
DECIPHERCENPBD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPBD1 
Mutations
ICGC Data PortalCENPBD1 
TCGA Data PortalCENPBD1 
Broad Tumor PortalCENPBD1
OASIS PortalCENPBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPBD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPBD1
DgiDB (Drug Gene Interaction Database)CENPBD1
DoCM (Curated mutations)CENPBD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPBD1 (select a term)
intoGenCENPBD1
Cancer3DCENPBD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCENPBD1
Genetic Testing Registry CENPBD1
NextProtB2RD01 [Medical]
TSGene92806
GENETestsCENPBD1
Target ValidationCENPBD1
Huge Navigator CENPBD1 [HugePedia]
snp3D : Map Gene to Disease92806
BioCentury BCIQCENPBD1
ClinGenCENPBD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92806
Chemical/Pharm GKB GenePA165449826
Clinical trialCENPBD1
Miscellaneous
canSAR (ICR)CENPBD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPBD1
EVEXCENPBD1
GoPubMedCENPBD1
iHOPCENPBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:11 CEST 2017

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