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CENPH (centromere protein H)

Identity

Other alias-
HGNC (Hugo) CENPH
LocusID (NCBI) 64946
Atlas_Id 43644
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69189548 and ends at 69210357 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPH (5q13.2) / MGAT5 (2q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPH   17268
Cards
Entrez_Gene (NCBI)CENPH  64946  centromere protein H
Aliases
GeneCards (Weizmann)CENPH
Ensembl hg19 (Hinxton)ENSG00000153044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153044 [Gene_View]  chr5:69189548-69210357 [Contig_View]  CENPH [Vega]
ICGC DataPortalENSG00000153044
TCGA cBioPortalCENPH
AceView (NCBI)CENPH
Genatlas (Paris)CENPH
WikiGenes64946
SOURCE (Princeton)CENPH
Genetics Home Reference (NIH)CENPH
Genomic and cartography
GoldenPath hg38 (UCSC)CENPH  -     chr5:69189548-69210357 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPH  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblCENPH - 5q13.2 [CytoView hg19]  CENPH - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBICENPH [Mapview hg19]  CENPH [Mapview hg38]
OMIM605607   
Gene and transcription
Genbank (Entrez)AB035124 AK123761 AK290746 BC012024 BC015355
RefSeq transcript (Entrez)NM_022909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPH
Cluster EST : UnigeneHs.631967 [ NCBI ]
CGAP (NCI)Hs.631967
Alternative Splicing GalleryENSG00000153044
Gene ExpressionCENPH [ NCBI-GEO ]   CENPH [ EBI - ARRAY_EXPRESS ]   CENPH [ SEEK ]   CENPH [ MEM ]
Gene Expression Viewer (FireBrowse)CENPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64946
GTEX Portal (Tissue expression)CENPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3R5
Splice isoforms : SwissVarQ9H3R5
PhosPhoSitePlusQ9H3R5
Domains : Interpro (EBI)CENP-H   
Domain families : Pfam (Sanger)CENP-H (PF05837)   
Domain families : Pfam (NCBI)pfam05837   
Conserved Domain (NCBI)CENPH
DMDM Disease mutations64946
Blocks (Seattle)CENPH
SuperfamilyQ9H3R5
Human Protein AtlasENSG00000153044
Peptide AtlasQ9H3R5
HPRD12029
IPIIPI00009668   IPI00966395   IPI00966133   IPI00966940   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3R5
IntAct (EBI)Q9H3R5
FunCoupENSG00000153044
BioGRIDCENPH
STRING (EMBL)CENPH
ZODIACCENPH
Ontologies - Pathways
QuickGOQ9H3R5
Ontology : AmiGOkinetochore  kinetochore  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  kinetochore binding  kinetochore assembly  kinetochore organization  
Ontology : EGO-EBIkinetochore  kinetochore  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  kinetochore binding  kinetochore assembly  kinetochore organization  
NDEx NetworkCENPH
Atlas of Cancer Signalling NetworkCENPH
Wikipedia pathwaysCENPH
Orthology - Evolution
OrthoDB64946
GeneTree (enSembl)ENSG00000153044
Phylogenetic Trees/Animal Genes : TreeFamCENPH
HOVERGENQ9H3R5
HOGENOMQ9H3R5
Homologs : HomoloGeneCENPH
Homology/Alignments : Family Browser (UCSC)CENPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPH
dbVarCENPH
ClinVarCENPH
1000_GenomesCENPH 
Exome Variant ServerCENPH
ExAC (Exome Aggregation Consortium)CENPH (select the gene name)
Genetic variants : HAPMAP64946
Genomic Variants (DGV)CENPH [DGVbeta]
DECIPHERCENPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPH 
Mutations
ICGC Data PortalCENPH 
TCGA Data PortalCENPH 
Broad Tumor PortalCENPH
OASIS PortalCENPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPH
DgiDB (Drug Gene Interaction Database)CENPH
DoCM (Curated mutations)CENPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPH (select a term)
intoGenCENPH
Cancer3DCENPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605607   
Orphanet
MedgenCENPH
Genetic Testing Registry CENPH
NextProtQ9H3R5 [Medical]
TSGene64946
GENETestsCENPH
Target ValidationCENPH
Huge Navigator CENPH [HugePedia]
snp3D : Map Gene to Disease64946
BioCentury BCIQCENPH
ClinGenCENPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64946
Chemical/Pharm GKB GenePA26402
Clinical trialCENPH
Miscellaneous
canSAR (ICR)CENPH (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPH
EVEXCENPH
GoPubMedCENPH
iHOPCENPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:27:58 CEST 2017

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