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CENPM (centromere protein M)

Identity

Alias_namesC22orf18
chromosome 22 open reading frame 18
Alias_symbol (synonym)Pane1
CENP-M
MGC861
Other aliasPANE1
HGNC (Hugo) CENPM
LocusID (NCBI) 79019
Atlas_Id 56435
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41938721 and ends at 41947164 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPM   18352
Cards
Entrez_Gene (NCBI)CENPM  79019  centromere protein M
AliasesC22orf18; CENP-M; PANE1
GeneCards (Weizmann)CENPM
Ensembl hg19 (Hinxton)ENSG00000100162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100162 [Gene_View]  chr22:41938721-41947164 [Contig_View]  CENPM [Vega]
ICGC DataPortalENSG00000100162
TCGA cBioPortalCENPM
AceView (NCBI)CENPM
Genatlas (Paris)CENPM
WikiGenes79019
SOURCE (Princeton)CENPM
Genetics Home Reference (NIH)CENPM
Genomic and cartography
GoldenPath hg38 (UCSC)CENPM  -     chr22:41938721-41947164 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPM  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblCENPM - 22q13.2 [CytoView hg19]  CENPM - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBICENPM [Mapview hg19]  CENPM [Mapview hg38]
OMIM610152   
Gene and transcription
Genbank (Entrez)AK123479 AL160131 BC000705 BC007495 BE789455
RefSeq transcript (Entrez)NM_001002876 NM_001110215 NM_001304370 NM_001304371 NM_001304372 NM_001304373 NM_024053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPM
Cluster EST : UnigeneHs.208912 [ NCBI ]
CGAP (NCI)Hs.208912
Alternative Splicing GalleryENSG00000100162
Gene ExpressionCENPM [ NCBI-GEO ]   CENPM [ EBI - ARRAY_EXPRESS ]   CENPM [ SEEK ]   CENPM [ MEM ]
Gene Expression Viewer (FireBrowse)CENPM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79019
GTEX Portal (Tissue expression)CENPM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSP4
Splice isoforms : SwissVarQ9NSP4
PhosPhoSitePlusQ9NSP4
Domains : Interpro (EBI)Centromere_Cenp-M   
Domain families : Pfam (Sanger)CENP-M (PF11111)   
Domain families : Pfam (NCBI)pfam11111   
Conserved Domain (NCBI)CENPM
DMDM Disease mutations79019
Blocks (Seattle)CENPM
PDB (SRS)4P0T    4WAU   
PDB (PDBSum)4P0T    4WAU   
PDB (IMB)4P0T    4WAU   
PDB (RSDB)4P0T    4WAU   
Structural Biology KnowledgeBase4P0T    4WAU   
SCOP (Structural Classification of Proteins)4P0T    4WAU   
CATH (Classification of proteins structures)4P0T    4WAU   
SuperfamilyQ9NSP4
Human Protein AtlasENSG00000100162
Peptide AtlasQ9NSP4
HPRD12798
IPIIPI00031566   IPI00410143   IPI00739757   IPI00889601   IPI00893712   IPI00893348   IPI00938104   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSP4
IntAct (EBI)Q9NSP4
FunCoupENSG00000100162
BioGRIDCENPM
STRING (EMBL)CENPM
ZODIACCENPM
Ontologies - Pathways
QuickGOQ9NSP4
Ontology : AmiGOcondensed chromosome kinetochore  nucleoplasm  cytosol  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
Ontology : EGO-EBIcondensed chromosome kinetochore  nucleoplasm  cytosol  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
NDEx NetworkCENPM
Atlas of Cancer Signalling NetworkCENPM
Wikipedia pathwaysCENPM
Orthology - Evolution
OrthoDB79019
GeneTree (enSembl)ENSG00000100162
Phylogenetic Trees/Animal Genes : TreeFamCENPM
HOVERGENQ9NSP4
HOGENOMQ9NSP4
Homologs : HomoloGeneCENPM
Homology/Alignments : Family Browser (UCSC)CENPM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPM
dbVarCENPM
ClinVarCENPM
1000_GenomesCENPM 
Exome Variant ServerCENPM
ExAC (Exome Aggregation Consortium)CENPM (select the gene name)
Genetic variants : HAPMAP79019
Genomic Variants (DGV)CENPM [DGVbeta]
DECIPHERCENPM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPM 
Mutations
ICGC Data PortalCENPM 
TCGA Data PortalCENPM 
Broad Tumor PortalCENPM
OASIS PortalCENPM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPM
DgiDB (Drug Gene Interaction Database)CENPM
DoCM (Curated mutations)CENPM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPM (select a term)
intoGenCENPM
Cancer3DCENPM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610152   
Orphanet
MedgenCENPM
Genetic Testing Registry CENPM
NextProtQ9NSP4 [Medical]
TSGene79019
GENETestsCENPM
Target ValidationCENPM
Huge Navigator CENPM [HugePedia]
snp3D : Map Gene to Disease79019
BioCentury BCIQCENPM
ClinGenCENPM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79019
Chemical/Pharm GKB GenePA25885
Clinical trialCENPM
Miscellaneous
canSAR (ICR)CENPM (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPM
EVEXCENPM
GoPubMedCENPM
iHOPCENPM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:36 CEST 2017

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