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CENPN (centromere protein N)

Identity

Alias_namesC16orf60
chromosome 16 open reading frame 60
Alias_symbol (synonym)FLJ13607
FLJ22660
BM039
Other aliasCENP-N
ICEN32
HGNC (Hugo) CENPN
LocusID (NCBI) 55839
Atlas_Id 61708
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 81006498 and ends at 81031485 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPN   30873
Cards
Entrez_Gene (NCBI)CENPN  55839  centromere protein N
AliasesBM039; C16orf60; CENP-N; ICEN32
GeneCards (Weizmann)CENPN
Ensembl hg19 (Hinxton)ENSG00000166451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166451 [Gene_View]  chr16:81006498-81031485 [Contig_View]  CENPN [Vega]
ICGC DataPortalENSG00000166451
TCGA cBioPortalCENPN
AceView (NCBI)CENPN
Genatlas (Paris)CENPN
WikiGenes55839
SOURCE (Princeton)CENPN
Genetics Home Reference (NIH)CENPN
Genomic and cartography
GoldenPath hg38 (UCSC)CENPN  -     chr16:81006498-81031485 +  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPN  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblCENPN - 16q23.2 [CytoView hg19]  CENPN - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBICENPN [Mapview hg19]  CENPN [Mapview hg38]
OMIM611509   
Gene and transcription
Genbank (Entrez)AF217515 AK023669 AK026313 AK296024 AK298554
RefSeq transcript (Entrez)NM_001100624 NM_001100625 NM_001270473 NM_001270474 NM_018455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPN
Cluster EST : UnigeneHs.726537 [ NCBI ]
CGAP (NCI)Hs.726537
Alternative Splicing GalleryENSG00000166451
Gene ExpressionCENPN [ NCBI-GEO ]   CENPN [ EBI - ARRAY_EXPRESS ]   CENPN [ SEEK ]   CENPN [ MEM ]
Gene Expression Viewer (FireBrowse)CENPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55839
GTEX Portal (Tissue expression)CENPN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H22
Splice isoforms : SwissVarQ96H22
PhosPhoSitePlusQ96H22
Domains : Interpro (EBI)CENP-N    Chl4/mis15/CENP-N   
Domain families : Pfam (Sanger)CENP-N (PF05238)   
Domain families : Pfam (NCBI)pfam05238   
Conserved Domain (NCBI)CENPN
DMDM Disease mutations55839
Blocks (Seattle)CENPN
SuperfamilyQ96H22
Human Protein AtlasENSG00000166451
Peptide AtlasQ96H22
HPRD12528
IPIIPI00305656   IPI00020485   IPI00909615   IPI00908795   IPI00645096   
Protein Interaction databases
DIP (DOE-UCLA)Q96H22
IntAct (EBI)Q96H22
FunCoupENSG00000166451
BioGRIDCENPN
STRING (EMBL)CENPN
ZODIACCENPN
Ontologies - Pathways
QuickGOQ96H22
Ontology : AmiGOcondensed chromosome kinetochore  nucleus  nucleoplasm  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
Ontology : EGO-EBIcondensed chromosome kinetochore  nucleus  nucleoplasm  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
NDEx NetworkCENPN
Atlas of Cancer Signalling NetworkCENPN
Wikipedia pathwaysCENPN
Orthology - Evolution
OrthoDB55839
GeneTree (enSembl)ENSG00000166451
Phylogenetic Trees/Animal Genes : TreeFamCENPN
HOVERGENQ96H22
HOGENOMQ96H22
Homologs : HomoloGeneCENPN
Homology/Alignments : Family Browser (UCSC)CENPN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPN
dbVarCENPN
ClinVarCENPN
1000_GenomesCENPN 
Exome Variant ServerCENPN
ExAC (Exome Aggregation Consortium)CENPN (select the gene name)
Genetic variants : HAPMAP55839
Genomic Variants (DGV)CENPN [DGVbeta]
DECIPHERCENPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPN 
Mutations
ICGC Data PortalCENPN 
TCGA Data PortalCENPN 
Broad Tumor PortalCENPN
OASIS PortalCENPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPN
DgiDB (Drug Gene Interaction Database)CENPN
DoCM (Curated mutations)CENPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPN (select a term)
intoGenCENPN
Cancer3DCENPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611509   
Orphanet
MedgenCENPN
Genetic Testing Registry CENPN
NextProtQ96H22 [Medical]
TSGene55839
GENETestsCENPN
Target ValidationCENPN
Huge Navigator CENPN [HugePedia]
snp3D : Map Gene to Disease55839
BioCentury BCIQCENPN
ClinGenCENPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55839
Chemical/Pharm GKB GenePA143485397
Clinical trialCENPN
Miscellaneous
canSAR (ICR)CENPN (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPN
EVEXCENPN
GoPubMedCENPN
iHOPCENPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:33 CEST 2017

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