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CENPO (centromere protein O)

Identity

Alias (NCBI)CENP-O
ICEN-36
MCM21R
HGNC (Hugo) CENPO
HGNC Alias symbMGC11266
CENP-O
LocusID (NCBI) 79172
Atlas_Id 61709
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24793115 and ends at 24822376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CENPO (2p23.3) / KLF12 (13q22.1)CENPO (2p23.3) / SPARC (5q33.1)CENPO (2p23.3) / UBXN2A (2p23.3)
TRA2A (7p15.3) / CENPO (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CENPO   28152
Cards
Entrez_Gene (NCBI)CENPO    centromere protein O
AliasesCENP-O; ICEN-36; MCM21R
GeneCards (Weizmann)CENPO
Ensembl hg19 (Hinxton)ENSG00000138092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138092 [Gene_View]  ENSG00000138092 [Sequence]  chr2:24793115-24822376 [Contig_View]  CENPO [Vega]
ICGC DataPortalENSG00000138092
TCGA cBioPortalCENPO
AceView (NCBI)CENPO
Genatlas (Paris)CENPO
SOURCE (Princeton)CENPO
Genetics Home Reference (NIH)CENPO
Genomic and cartography
GoldenPath hg38 (UCSC)CENPO  -     chr2:24793115-24822376 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPO  -     2p23.3   [Description]    (hg19-Feb_2009)
GoldenPathCENPO - 2p23.3 [CytoView hg19]  CENPO - 2p23.3 [CytoView hg38]
ImmunoBaseENSG00000138092
Genome Data Viewer NCBICENPO [Mapview hg19]  
OMIM611504   
Gene and transcription
Genbank (Entrez)AK027859 AK315483 AL514456 BC002870 BP366489
RefSeq transcript (Entrez)NM_001199803 NM_001322101 NM_024322
Consensus coding sequences : CCDS (NCBI)CENPO
Gene ExpressionCENPO [ NCBI-GEO ]   CENPO [ EBI - ARRAY_EXPRESS ]   CENPO [ SEEK ]   CENPO [ MEM ]
Gene Expression Viewer (FireBrowse)CENPO [ Firebrowse - Broad ]
GenevisibleExpression of CENPO in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79172
GTEX Portal (Tissue expression)CENPO
Human Protein AtlasENSG00000138092-CENPO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU64
PhosPhoSitePlusQ9BU64
Domains : Interpro (EBI)CENP-O   
Domain families : Pfam (Sanger)CENP-O (PF09496)   
Domain families : Pfam (NCBI)pfam09496   
Conserved Domain (NCBI)CENPO
SuperfamilyQ9BU64
AlphaFold pdb e-kbQ9BU64   
Human Protein Atlas [tissue]ENSG00000138092-CENPO [tissue]
HPRD14414
Protein Interaction databases
DIP (DOE-UCLA)Q9BU64
IntAct (EBI)Q9BU64
BioGRIDCENPO
STRING (EMBL)CENPO
ZODIACCENPO
Ontologies - Pathways
QuickGOQ9BU64
Ontology : AmiGOkinetochore  protein binding  nucleoplasm  nucleoplasm  cytosol  mitotic spindle organization  nuclear body  Mis6-Sim4 complex  CENP-A containing nucleosome assembly  
Ontology : EGO-EBIkinetochore  protein binding  nucleoplasm  nucleoplasm  cytosol  mitotic spindle organization  nuclear body  Mis6-Sim4 complex  CENP-A containing nucleosome assembly  
NDEx NetworkCENPO
Atlas of Cancer Signalling NetworkCENPO
Wikipedia pathwaysCENPO
Orthology - Evolution
OrthoDB79172
GeneTree (enSembl)ENSG00000138092
Phylogenetic Trees/Animal Genes : TreeFamCENPO
Homologs : HomoloGeneCENPO
Homology/Alignments : Family Browser (UCSC)CENPO
Gene fusions - Rearrangements
Fusion : QuiverCENPO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPO
dbVarCENPO
ClinVarCENPO
MonarchCENPO
1000_GenomesCENPO 
Exome Variant ServerCENPO
GNOMAD BrowserENSG00000138092
Varsome BrowserCENPO
ACMGCENPO variants
VarityQ9BU64
Genomic Variants (DGV)CENPO [DGVbeta]
DECIPHERCENPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPO 
Mutations
ICGC Data PortalCENPO 
TCGA Data PortalCENPO 
Broad Tumor PortalCENPO
OASIS PortalCENPO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPO  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCENPO
Mutations and Diseases : HGMDCENPO
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCENPO
DgiDB (Drug Gene Interaction Database)CENPO
DoCM (Curated mutations)CENPO
CIViC (Clinical Interpretations of Variants in Cancer)CENPO
Cancer3DCENPO
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611504   
Orphanet
DisGeNETCENPO
MedgenCENPO
Genetic Testing Registry CENPO
NextProtQ9BU64 [Medical]
GENETestsCENPO
Target ValidationCENPO
Huge Navigator CENPO [HugePedia]
ClinGenCENPO
Clinical trials, drugs, therapy
MyCancerGenomeCENPO
Protein Interactions : CTDCENPO
Pharm GKB GenePA145149197
PharosQ9BU64
Clinical trialCENPO
Miscellaneous
canSAR (ICR)CENPO
HarmonizomeCENPO
DataMed IndexCENPO
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCENPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:43 CEST 2021

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