Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CENPO (centromere protein O)

Identity

Alias_symbol (synonym)MGC11266
CENP-O
Other aliasICEN-36
MCM21R
HGNC (Hugo) CENPO
LocusID (NCBI) 79172
Atlas_Id 61709
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24793115 and ends at 24822376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CENPO (2p23.3) / KLF12 (13q22.1)CENPO (2p23.3) / SPARC (5q33.1)CENPO (2p23.3) / UBXN2A (2p23.3)
TRA2A (7p15.3) / CENPO (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPO   28152
Cards
Entrez_Gene (NCBI)CENPO  79172  centromere protein O
AliasesCENP-O; ICEN-36; MCM21R
GeneCards (Weizmann)CENPO
Ensembl hg19 (Hinxton)ENSG00000138092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138092 [Gene_View]  chr2:24793115-24822376 [Contig_View]  CENPO [Vega]
ICGC DataPortalENSG00000138092
TCGA cBioPortalCENPO
AceView (NCBI)CENPO
Genatlas (Paris)CENPO
WikiGenes79172
SOURCE (Princeton)CENPO
Genetics Home Reference (NIH)CENPO
Genomic and cartography
GoldenPath hg38 (UCSC)CENPO  -     chr2:24793115-24822376 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPO  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblCENPO - 2p23.3 [CytoView hg19]  CENPO - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBICENPO [Mapview hg19]  CENPO [Mapview hg38]
OMIM611504   
Gene and transcription
Genbank (Entrez)AK027859 AK315483 AL514456 BC002870 BP366489
RefSeq transcript (Entrez)NM_001199803 NM_001322101 NM_024322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPO
Cluster EST : UnigeneHs.731569 [ NCBI ]
CGAP (NCI)Hs.731569
Alternative Splicing GalleryENSG00000138092
Gene ExpressionCENPO [ NCBI-GEO ]   CENPO [ EBI - ARRAY_EXPRESS ]   CENPO [ SEEK ]   CENPO [ MEM ]
Gene Expression Viewer (FireBrowse)CENPO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79172
GTEX Portal (Tissue expression)CENPO
Human Protein AtlasENSG00000138092-CENPO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU64
Splice isoforms : SwissVarQ9BU64
PhosPhoSitePlusQ9BU64
Domains : Interpro (EBI)CENP-O   
Domain families : Pfam (Sanger)CENP-O (PF09496)   
Domain families : Pfam (NCBI)pfam09496   
Conserved Domain (NCBI)CENPO
DMDM Disease mutations79172
Blocks (Seattle)CENPO
SuperfamilyQ9BU64
Human Protein Atlas [tissue]ENSG00000138092-CENPO [tissue]
Peptide AtlasQ9BU64
HPRD14414
IPIIPI00013338   IPI00788136   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU64
IntAct (EBI)Q9BU64
FunCoupENSG00000138092
BioGRIDCENPO
STRING (EMBL)CENPO
ZODIACCENPO
Ontologies - Pathways
QuickGOQ9BU64
Ontology : AmiGOcondensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
Ontology : EGO-EBIcondensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  cytosol  sister chromatid cohesion  CENP-A containing nucleosome assembly  
NDEx NetworkCENPO
Atlas of Cancer Signalling NetworkCENPO
Wikipedia pathwaysCENPO
Orthology - Evolution
OrthoDB79172
GeneTree (enSembl)ENSG00000138092
Phylogenetic Trees/Animal Genes : TreeFamCENPO
HOVERGENQ9BU64
HOGENOMQ9BU64
Homologs : HomoloGeneCENPO
Homology/Alignments : Family Browser (UCSC)CENPO
Gene fusions - Rearrangements
Fusion: Tumor Portal CENPO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPO
dbVarCENPO
ClinVarCENPO
1000_GenomesCENPO 
Exome Variant ServerCENPO
ExAC (Exome Aggregation Consortium)ENSG00000138092
GNOMAD BrowserENSG00000138092
Genetic variants : HAPMAP79172
Genomic Variants (DGV)CENPO [DGVbeta]
DECIPHERCENPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPO 
Mutations
ICGC Data PortalCENPO 
TCGA Data PortalCENPO 
Broad Tumor PortalCENPO
OASIS PortalCENPO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPO
DgiDB (Drug Gene Interaction Database)CENPO
DoCM (Curated mutations)CENPO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPO (select a term)
intoGenCENPO
Cancer3DCENPO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611504   
Orphanet
MedgenCENPO
Genetic Testing Registry CENPO
NextProtQ9BU64 [Medical]
TSGene79172
GENETestsCENPO
Target ValidationCENPO
Huge Navigator CENPO [HugePedia]
snp3D : Map Gene to Disease79172
BioCentury BCIQCENPO
ClinGenCENPO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79172
Chemical/Pharm GKB GenePA145149197
Clinical trialCENPO
Miscellaneous
canSAR (ICR)CENPO (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPO
EVEXCENPO
GoPubMedCENPO
iHOPCENPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:16 CET 2017

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