Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CENPS (centromere protein S)

Identity

Alias_namesAPITD1
MHF1
apoptosis-inducing, TAF9-like domain 1
FANCM associated histone fold protein 1
Alias_symbol (synonym)CENP-S
FAAP16
Other alias
HGNC (Hugo) CENPS
LocusID (NCBI) 378708
Atlas_Id 55946
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 10430102 and ends at 10442815 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPS   23163
Cards
Entrez_Gene (NCBI)CENPS  378708  centromere protein S
AliasesAPITD1; CENP-S; FAAP16; MHF1
GeneCards (Weizmann)CENPS
Ensembl hg19 (Hinxton)ENSG00000175279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175279 [Gene_View]  chr1:10430102-10442815 [Contig_View]  CENPS [Vega]
ICGC DataPortalENSG00000175279
TCGA cBioPortalCENPS
AceView (NCBI)CENPS
Genatlas (Paris)CENPS
WikiGenes378708
SOURCE (Princeton)CENPS
Genetics Home Reference (NIH)CENPS
Genomic and cartography
GoldenPath hg38 (UCSC)CENPS  -     chr1:10430102-10442815 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPS  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblCENPS - 1p36.22 [CytoView hg19]  CENPS - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBICENPS [Mapview hg19]  CENPS [Mapview hg38]
OMIM609130   
Gene and transcription
Genbank (Entrez)BC029430 BE858209 BG213105 BG546364 BM905996
RefSeq transcript (Entrez)NM_199294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPS
Cluster EST : UnigeneHs.412311 [ NCBI ]
CGAP (NCI)Hs.412311
Alternative Splicing GalleryENSG00000175279
Gene ExpressionCENPS [ NCBI-GEO ]   CENPS [ EBI - ARRAY_EXPRESS ]   CENPS [ SEEK ]   CENPS [ MEM ]
Gene Expression Viewer (FireBrowse)CENPS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378708
GTEX Portal (Tissue expression)CENPS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2Z9
Splice isoforms : SwissVarQ8N2Z9
PhosPhoSitePlusQ8N2Z9
Domains : Interpro (EBI)CENP-S/Mhf1    CENPS    Histone-fold   
Domain families : Pfam (Sanger)CENP-S (PF15630)   
Domain families : Pfam (NCBI)pfam15630   
Conserved Domain (NCBI)CENPS
DMDM Disease mutations378708
Blocks (Seattle)CENPS
PDB (SRS)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (PDBSum)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (IMB)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (RSDB)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
Structural Biology KnowledgeBase4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
SCOP (Structural Classification of Proteins)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
CATH (Classification of proteins structures)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
SuperfamilyQ8N2Z9
Human Protein AtlasENSG00000175279
Peptide AtlasQ8N2Z9
IPIIPI00166526   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2Z9
IntAct (EBI)Q8N2Z9
FunCoupENSG00000175279
BioGRIDCENPS
STRING (EMBL)CENPS
ZODIACCENPS
Ontologies - Pathways
QuickGOQ8N2Z9
Ontology : AmiGOresolution of meiotic recombination intermediates  condensed chromosome kinetochore  DNA binding  chromatin binding  double-stranded DNA binding  protein binding  nucleoplasm  cytosol  DNA repair  mitotic recombination  cellular response to DNA damage stimulus  cellular response to DNA damage stimulus  sister chromatid cohesion  replication fork processing  positive regulation of protein ubiquitination  CENP-A containing nucleosome assembly  interstrand cross-link repair  interstrand cross-link repair  Fanconi anaemia nuclear complex  protein heterodimerization activity  cell division  kinetochore assembly  FANCM-MHF complex  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  condensed chromosome kinetochore  DNA binding  chromatin binding  double-stranded DNA binding  protein binding  nucleoplasm  cytosol  DNA repair  mitotic recombination  cellular response to DNA damage stimulus  cellular response to DNA damage stimulus  sister chromatid cohesion  replication fork processing  positive regulation of protein ubiquitination  CENP-A containing nucleosome assembly  interstrand cross-link repair  interstrand cross-link repair  Fanconi anaemia nuclear complex  protein heterodimerization activity  cell division  kinetochore assembly  FANCM-MHF complex  
NDEx NetworkCENPS
Atlas of Cancer Signalling NetworkCENPS
Wikipedia pathwaysCENPS
Orthology - Evolution
OrthoDB378708
GeneTree (enSembl)ENSG00000175279
Phylogenetic Trees/Animal Genes : TreeFamCENPS
HOVERGENQ8N2Z9
HOGENOMQ8N2Z9
Homologs : HomoloGeneCENPS
Homology/Alignments : Family Browser (UCSC)CENPS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPS
dbVarCENPS
ClinVarCENPS
1000_GenomesCENPS 
Exome Variant ServerCENPS
ExAC (Exome Aggregation Consortium)CENPS (select the gene name)
Genetic variants : HAPMAP378708
Genomic Variants (DGV)CENPS [DGVbeta]
DECIPHERCENPS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPS 
Mutations
ICGC Data PortalCENPS 
TCGA Data PortalCENPS 
Broad Tumor PortalCENPS
OASIS PortalCENPS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCENPS
BioMutasearch CENPS
DgiDB (Drug Gene Interaction Database)CENPS
DoCM (Curated mutations)CENPS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPS (select a term)
intoGenCENPS
Cancer3DCENPS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609130   
Orphanet
MedgenCENPS
Genetic Testing Registry CENPS
NextProtQ8N2Z9 [Medical]
TSGene378708
GENETestsCENPS
Target ValidationCENPS
Huge Navigator CENPS [HugePedia]
snp3D : Map Gene to Disease378708
BioCentury BCIQCENPS
ClinGenCENPS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378708
Chemical/Pharm GKB GenePA134861614
Clinical trialCENPS
Miscellaneous
canSAR (ICR)CENPS (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPS
EVEXCENPS
GoPubMedCENPS
iHOPCENPS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:27:59 CEST 2017

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