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CENPT (centromere protein T)

Identity

Alias_namesC16orf56
chromosome 16 open reading frame 56
Alias_symbol (synonym)FLJ13111
CENP-T
Other alias
HGNC (Hugo) CENPT
LocusID (NCBI) 80152
Atlas_Id 54209
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67828157 and ends at 67847458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPT (16q22.1) / CENPT (16q22.1)CENPT (16q22.1) / DPEP3 (16q22.1)CENPT (16q22.1) / NUTF2 (16q22.1)
RBM25 (14q24.2) / CENPT (16q22.1)VAC14 (16q22.1) / CENPT (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPT   25787
Cards
Entrez_Gene (NCBI)CENPT  80152  centromere protein T
AliasesC16orf56; CENP-T
GeneCards (Weizmann)CENPT
Ensembl hg19 (Hinxton)ENSG00000102901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102901 [Gene_View]  chr16:67828157-67847458 [Contig_View]  CENPT [Vega]
ICGC DataPortalENSG00000102901
TCGA cBioPortalCENPT
AceView (NCBI)CENPT
Genatlas (Paris)CENPT
WikiGenes80152
SOURCE (Princeton)CENPT
Genetics Home Reference (NIH)CENPT
Genomic and cartography
GoldenPath hg38 (UCSC)CENPT  -     chr16:67828157-67847458 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPT  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCENPT - 16q22.1 [CytoView hg19]  CENPT - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICENPT [Mapview hg19]  CENPT [Mapview hg38]
OMIM611510   
Gene and transcription
Genbank (Entrez)AK023173 AK055237 AK056097 AK125366 AK225399
RefSeq transcript (Entrez)NM_025082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPT
Cluster EST : UnigeneHs.288382 [ NCBI ]
CGAP (NCI)Hs.288382
Alternative Splicing GalleryENSG00000102901
Gene ExpressionCENPT [ NCBI-GEO ]   CENPT [ EBI - ARRAY_EXPRESS ]   CENPT [ SEEK ]   CENPT [ MEM ]
Gene Expression Viewer (FireBrowse)CENPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80152
GTEX Portal (Tissue expression)CENPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BT3
Splice isoforms : SwissVarQ96BT3
PhosPhoSitePlusQ96BT3
Domains : Interpro (EBI)CENP-T    CENP-T_N    Histone-fold   
Domain families : Pfam (Sanger)CENP-T_N (PF16171)   
Domain families : Pfam (NCBI)pfam16171   
Conserved Domain (NCBI)CENPT
DMDM Disease mutations80152
Blocks (Seattle)CENPT
SuperfamilyQ96BT3
Human Protein AtlasENSG00000102901
Peptide AtlasQ96BT3
IPIIPI00465368   IPI00643513   IPI00787249   IPI00909994   IPI00909259   IPI00909686   
Protein Interaction databases
DIP (DOE-UCLA)Q96BT3
IntAct (EBI)Q96BT3
FunCoupENSG00000102901
BioGRIDCENPT
STRING (EMBL)CENPT
ZODIACCENPT
Ontologies - Pathways
QuickGOQ96BT3
Ontology : AmiGOmitotic cell cycle  chromosome, centromeric region  kinetochore  condensed chromosome kinetochore  nuclear nucleosome  DNA binding  protein binding  nucleus  nucleoplasm  cytosol  chromosome segregation  sister chromatid cohesion  nuclear body  CENP-A containing nucleosome assembly  histone binding  protein heterodimerization activity  chromosome organization  cell division  kinetochore assembly  protein localization to kinetochore involved in kinetochore assembly  
Ontology : EGO-EBImitotic cell cycle  chromosome, centromeric region  kinetochore  condensed chromosome kinetochore  nuclear nucleosome  DNA binding  protein binding  nucleus  nucleoplasm  cytosol  chromosome segregation  sister chromatid cohesion  nuclear body  CENP-A containing nucleosome assembly  histone binding  protein heterodimerization activity  chromosome organization  cell division  kinetochore assembly  protein localization to kinetochore involved in kinetochore assembly  
NDEx NetworkCENPT
Atlas of Cancer Signalling NetworkCENPT
Wikipedia pathwaysCENPT
Orthology - Evolution
OrthoDB80152
GeneTree (enSembl)ENSG00000102901
Phylogenetic Trees/Animal Genes : TreeFamCENPT
HOVERGENQ96BT3
HOGENOMQ96BT3
Homologs : HomoloGeneCENPT
Homology/Alignments : Family Browser (UCSC)CENPT
Gene fusions - Rearrangements
Fusion : MitelmanCENPT/NUTF2 [16q22.1/16q22.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPT
dbVarCENPT
ClinVarCENPT
1000_GenomesCENPT 
Exome Variant ServerCENPT
ExAC (Exome Aggregation Consortium)CENPT (select the gene name)
Genetic variants : HAPMAP80152
Genomic Variants (DGV)CENPT [DGVbeta]
DECIPHERCENPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPT 
Mutations
ICGC Data PortalCENPT 
TCGA Data PortalCENPT 
Broad Tumor PortalCENPT
OASIS PortalCENPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPT
DgiDB (Drug Gene Interaction Database)CENPT
DoCM (Curated mutations)CENPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPT (select a term)
intoGenCENPT
Cancer3DCENPT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611510   
Orphanet
MedgenCENPT
Genetic Testing Registry CENPT
NextProtQ96BT3 [Medical]
TSGene80152
GENETestsCENPT
Target ValidationCENPT
Huge Navigator CENPT [HugePedia]
snp3D : Map Gene to Disease80152
BioCentury BCIQCENPT
ClinGenCENPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80152
Chemical/Pharm GKB GenePA142672263
Clinical trialCENPT
Miscellaneous
canSAR (ICR)CENPT (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPT
EVEXCENPT
GoPubMedCENPT
iHOPCENPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:36 CEST 2017

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