Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CENPU (centromere protein U)

Identity

Alias_namesMLF1IP
MLF1 interacting protein
Alias_symbol (synonym)CENP-U
KLIP1
CENP-50
PBIP1
Other aliasCENP50
CENPU50
HGNC (Hugo) CENPU
LocusID (NCBI) 79682
Atlas_Id 45740
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185615219 and ends at 185655286 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPU   21348
Cards
Entrez_Gene (NCBI)CENPU  79682  centromere protein U
AliasesCENP50; CENPU50; KLIP1; MLF1IP; 
PBIP1
GeneCards (Weizmann)CENPU
Ensembl hg19 (Hinxton)ENSG00000151725 [Gene_View]  chr4:185615219-185655286 [Contig_View]  CENPU [Vega]
Ensembl hg38 (Hinxton)ENSG00000151725 [Gene_View]  chr4:185615219-185655286 [Contig_View]  CENPU [Vega]
ICGC DataPortalENSG00000151725
TCGA cBioPortalCENPU
AceView (NCBI)CENPU
Genatlas (Paris)CENPU
WikiGenes79682
SOURCE (Princeton)CENPU
Genetics Home Reference (NIH)CENPU
Genomic and cartography
GoldenPath hg19 (UCSC)CENPU  -     chr4:185615219-185655286 -  4q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CENPU  -     4q35.1   [Description]    (hg38-Dec_2013)
EnsemblCENPU - 4q35.1 [CytoView hg19]  CENPU - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICENPU [Mapview hg19]  CENPU [Mapview hg38]
OMIM611511   
Gene and transcription
Genbank (Entrez)AA761728 AF469667 AF516710 AK027121 AK292297
RefSeq transcript (Entrez)NM_024629
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CENPU
Cluster EST : UnigeneHs.575032 [ NCBI ]
CGAP (NCI)Hs.575032
Alternative Splicing GalleryENSG00000151725
Gene ExpressionCENPU [ NCBI-GEO ]   CENPU [ EBI - ARRAY_EXPRESS ]   CENPU [ SEEK ]   CENPU [ MEM ]
Gene Expression Viewer (FireBrowse)CENPU [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79682
GTEX Portal (Tissue expression)CENPU
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71F23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71F23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71F23
Splice isoforms : SwissVarQ71F23
PhosPhoSitePlusQ71F23
Domains : Interpro (EBI)CENP-U   
Domain families : Pfam (Sanger)CENP-U (PF13097)   
Domain families : Pfam (NCBI)pfam13097   
Conserved Domain (NCBI)CENPU
DMDM Disease mutations79682
Blocks (Seattle)CENPU
SuperfamilyQ71F23
Human Protein AtlasENSG00000151725
Peptide AtlasQ71F23
HPRD14722
IPIIPI00002828   IPI00783686   IPI00965912   IPI01013998   
Protein Interaction databases
DIP (DOE-UCLA)Q71F23
IntAct (EBI)Q71F23
FunCoupENSG00000151725
BioGRIDCENPU
STRING (EMBL)CENPU
ZODIACCENPU
Ontologies - Pathways
QuickGOQ71F23
Ontology : AmiGOcondensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  sister chromatid cohesion  viral process  CENP-A containing nucleosome assembly  chordate embryonic development  
Ontology : EGO-EBIcondensed chromosome kinetochore  protein binding  nucleus  nucleoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  sister chromatid cohesion  viral process  CENP-A containing nucleosome assembly  chordate embryonic development  
NDEx NetworkCENPU
Atlas of Cancer Signalling NetworkCENPU
Wikipedia pathwaysCENPU
Orthology - Evolution
OrthoDB79682
GeneTree (enSembl)ENSG00000151725
Phylogenetic Trees/Animal Genes : TreeFamCENPU
HOVERGENQ71F23
HOGENOMQ71F23
Homologs : HomoloGeneCENPU
Homology/Alignments : Family Browser (UCSC)CENPU
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPU [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPU
dbVarCENPU
ClinVarCENPU
1000_GenomesCENPU 
Exome Variant ServerCENPU
ExAC (Exome Aggregation Consortium)CENPU (select the gene name)
Genetic variants : HAPMAP79682
Genomic Variants (DGV)CENPU [DGVbeta]
DECIPHER (Syndromes)4:185615219-185655286  ENSG00000151725
CONAN: Copy Number AnalysisCENPU 
Mutations
ICGC Data PortalCENPU 
TCGA Data PortalCENPU 
Broad Tumor PortalCENPU
OASIS PortalCENPU [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCENPU
BioMutasearch CENPU
DgiDB (Drug Gene Interaction Database)CENPU
DoCM (Curated mutations)CENPU (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPU (select a term)
intoGenCENPU
Cancer3DCENPU(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611511   
Orphanet
MedgenCENPU
Genetic Testing Registry CENPU
NextProtQ71F23 [Medical]
TSGene79682
GENETestsCENPU
Huge Navigator CENPU [HugePedia]
snp3D : Map Gene to Disease79682
BioCentury BCIQCENPU
ClinGenCENPU
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79682
Chemical/Pharm GKB GenePA134893791
Clinical trialCENPU
Miscellaneous
canSAR (ICR)CENPU (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPU
EVEXCENPU
GoPubMedCENPU
iHOPCENPU
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:59:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.