Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CENPV (centromere protein V)

Identity

Alias_namesPRR6
proline rich 6
Alias_symbol (synonym)p30
CENP-V
Other alias3110013H01Rik
HGNC (Hugo) CENPV
LocusID (NCBI) 201161
Atlas_Id 61712
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16342534 and ends at 16353498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPV (17p11.2) / ATXN7 (3p14.1)CENPV (17p11.2) / FERMT1 (20p12.3)CENPV (17p11.2) / PDCD2L (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPV   29920
Cards
Entrez_Gene (NCBI)CENPV  201161  centromere protein V
Aliases3110013H01Rik; CENP-V; PRR6; p30
GeneCards (Weizmann)CENPV
Ensembl hg19 (Hinxton)ENSG00000166582 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166582 [Gene_View]  chr17:16342534-16353498 [Contig_View]  CENPV [Vega]
ICGC DataPortalENSG00000166582
TCGA cBioPortalCENPV
AceView (NCBI)CENPV
Genatlas (Paris)CENPV
WikiGenes201161
SOURCE (Princeton)CENPV
Genetics Home Reference (NIH)CENPV
Genomic and cartography
GoldenPath hg38 (UCSC)CENPV  -     chr17:16342534-16353498 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPV  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblCENPV - 17p11.2 [CytoView hg19]  CENPV - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICENPV [Mapview hg19]  CENPV [Mapview hg38]
OMIM608139   
Gene and transcription
Genbank (Entrez)AF514992 AY382899 BC052604 BC137486 BC137487
RefSeq transcript (Entrez)NM_181716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPV
Cluster EST : UnigeneHs.433422 [ NCBI ]
CGAP (NCI)Hs.433422
Alternative Splicing GalleryENSG00000166582
Gene ExpressionCENPV [ NCBI-GEO ]   CENPV [ EBI - ARRAY_EXPRESS ]   CENPV [ SEEK ]   CENPV [ MEM ]
Gene Expression Viewer (FireBrowse)CENPV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201161
GTEX Portal (Tissue expression)CENPV
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7K6
Splice isoforms : SwissVarQ7Z7K6
PhosPhoSitePlusQ7Z7K6
Domains : Interpro (EBI)GFA/CENP-V    Mss4-like   
Domain families : Pfam (Sanger)GFA (PF04828)   
Domain families : Pfam (NCBI)pfam04828   
Conserved Domain (NCBI)CENPV
DMDM Disease mutations201161
Blocks (Seattle)CENPV
SuperfamilyQ7Z7K6
Human Protein AtlasENSG00000166582
Peptide AtlasQ7Z7K6
IPIIPI00761082   IPI00761119   IPI00376481   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7K6
IntAct (EBI)Q7Z7K6
FunCoupENSG00000166582
BioGRIDCENPV
STRING (EMBL)CENPV
ZODIACCENPV
Ontologies - Pathways
QuickGOQ7Z7K6
Ontology : AmiGOkinetochore  condensed chromosome kinetochore  ameboidal-type cell migration  molecular_function  nucleus  nucleoplasm  cytosol  cell cycle  metabolic process  microtubule cytoskeleton  carbon-sulfur lyase activity  pericentric heterochromatin assembly  positive regulation of cytokinesis  regulation of chromosome organization  centromere complex assembly  spindle midzone  cell division  
Ontology : EGO-EBIkinetochore  condensed chromosome kinetochore  ameboidal-type cell migration  molecular_function  nucleus  nucleoplasm  cytosol  cell cycle  metabolic process  microtubule cytoskeleton  carbon-sulfur lyase activity  pericentric heterochromatin assembly  positive regulation of cytokinesis  regulation of chromosome organization  centromere complex assembly  spindle midzone  cell division  
NDEx NetworkCENPV
Atlas of Cancer Signalling NetworkCENPV
Wikipedia pathwaysCENPV
Orthology - Evolution
OrthoDB201161
GeneTree (enSembl)ENSG00000166582
Phylogenetic Trees/Animal Genes : TreeFamCENPV
HOVERGENQ7Z7K6
HOGENOMQ7Z7K6
Homologs : HomoloGeneCENPV
Homology/Alignments : Family Browser (UCSC)CENPV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPV
dbVarCENPV
ClinVarCENPV
1000_GenomesCENPV 
Exome Variant ServerCENPV
ExAC (Exome Aggregation Consortium)CENPV (select the gene name)
Genetic variants : HAPMAP201161
Genomic Variants (DGV)CENPV [DGVbeta]
DECIPHERCENPV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPV 
Mutations
ICGC Data PortalCENPV 
TCGA Data PortalCENPV 
Broad Tumor PortalCENPV
OASIS PortalCENPV [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCENPV  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCENPV
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CENPV
DgiDB (Drug Gene Interaction Database)CENPV
DoCM (Curated mutations)CENPV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPV (select a term)
intoGenCENPV
Cancer3DCENPV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608139   
Orphanet
MedgenCENPV
Genetic Testing Registry CENPV
NextProtQ7Z7K6 [Medical]
TSGene201161
GENETestsCENPV
Target ValidationCENPV
Huge Navigator CENPV [HugePedia]
snp3D : Map Gene to Disease201161
BioCentury BCIQCENPV
ClinGenCENPV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201161
Chemical/Pharm GKB GenePA164717842
Clinical trialCENPV
Miscellaneous
canSAR (ICR)CENPV (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPV
EVEXCENPV
GoPubMedCENPV
iHOPCENPV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:06 CEST 2017

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