Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CENPX (centromere protein X)

Identity

Alias_namesSTRA13
MHF2
stimulated by retinoic acid 13 homolog (mouse)
stimulated by retinoic acid 13
FANCM associated histone fold protein 2
Alias_symbol (synonym)MGC14480
FAAP10
CENP-X
Other aliasD9
HGNC (Hugo) CENPX
LocusID (NCBI) 201254
Atlas_Id 55930
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82018703 and ends at 82022909 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CENPX   11422
Cards
Entrez_Gene (NCBI)CENPX  201254  centromere protein X
AliasesCENP-X; D9; FAAP10; MHF2; 
STRA13
GeneCards (Weizmann)CENPX
Ensembl hg19 (Hinxton)ENSG00000169689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169689 [Gene_View]  chr17:82018703-82022909 [Contig_View]  CENPX [Vega]
ICGC DataPortalENSG00000169689
TCGA cBioPortalCENPX
AceView (NCBI)CENPX
Genatlas (Paris)CENPX
WikiGenes201254
SOURCE (Princeton)CENPX
Genetics Home Reference (NIH)CENPX
Genomic and cartography
GoldenPath hg38 (UCSC)CENPX  -     chr17:82018703-82022909 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CENPX  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCENPX - 17q25.3 [CytoView hg19]  CENPX - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICENPX [Mapview hg19]  CENPX [Mapview hg38]
OMIM615128   
Gene and transcription
Genbank (Entrez)BC009571 BC011610 BI837753 BQ648002 CB110145
RefSeq transcript (Entrez)NM_001271006 NM_001271007 NM_001330536 NM_144998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CENPX
Cluster EST : UnigeneHs.37616 [ NCBI ]
CGAP (NCI)Hs.37616
Alternative Splicing GalleryENSG00000169689
Gene ExpressionCENPX [ NCBI-GEO ]   CENPX [ EBI - ARRAY_EXPRESS ]   CENPX [ SEEK ]   CENPX [ MEM ]
Gene Expression Viewer (FireBrowse)CENPX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201254
GTEX Portal (Tissue expression)CENPX
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MT69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MT69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MT69
Splice isoforms : SwissVarA8MT69
PhosPhoSitePlusA8MT69
Domains : Interpro (EBI)CENP-X   
Domain families : Pfam (Sanger)CENP-X (PF09415)   
Domain families : Pfam (NCBI)pfam09415   
Conserved Domain (NCBI)CENPX
DMDM Disease mutations201254
Blocks (Seattle)CENPX
PDB (SRS)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (PDBSum)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (IMB)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
PDB (RSDB)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
Structural Biology KnowledgeBase4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
SCOP (Structural Classification of Proteins)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
CATH (Classification of proteins structures)4DRA    4DRB    4E44    4E45    4NDY    4NE1    4NE3    4NE5    4NE6   
SuperfamilyA8MT69
Human Protein AtlasENSG00000169689
Peptide AtlasA8MT69
HPRD18121
IPIIPI00795646   IPI00010887   IPI00795077   
Protein Interaction databases
DIP (DOE-UCLA)A8MT69
IntAct (EBI)A8MT69
FunCoupENSG00000169689
BioGRIDCENPX
STRING (EMBL)CENPX
ZODIACCENPX
Ontologies - Pathways
QuickGOA8MT69
Ontology : AmiGOresolution of meiotic recombination intermediates  condensed chromosome kinetochore  DNA binding  double-stranded DNA binding  protein binding  nucleoplasm  replication fork processing  positive regulation of protein ubiquitination  CENP-A containing nucleosome assembly  interstrand cross-link repair  Fanconi anaemia nuclear complex  cell division  kinetochore assembly  FANCM-MHF complex  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  condensed chromosome kinetochore  DNA binding  double-stranded DNA binding  protein binding  nucleoplasm  replication fork processing  positive regulation of protein ubiquitination  CENP-A containing nucleosome assembly  interstrand cross-link repair  Fanconi anaemia nuclear complex  cell division  kinetochore assembly  FANCM-MHF complex  
NDEx NetworkCENPX
Atlas of Cancer Signalling NetworkCENPX
Wikipedia pathwaysCENPX
Orthology - Evolution
OrthoDB201254
GeneTree (enSembl)ENSG00000169689
Phylogenetic Trees/Animal Genes : TreeFamCENPX
HOVERGENA8MT69
HOGENOMA8MT69
Homologs : HomoloGeneCENPX
Homology/Alignments : Family Browser (UCSC)CENPX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCENPX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CENPX
dbVarCENPX
ClinVarCENPX
1000_GenomesCENPX 
Exome Variant ServerCENPX
ExAC (Exome Aggregation Consortium)CENPX (select the gene name)
Genetic variants : HAPMAP201254
Genomic Variants (DGV)CENPX [DGVbeta]
DECIPHERCENPX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCENPX 
Mutations
ICGC Data PortalCENPX 
TCGA Data PortalCENPX 
Broad Tumor PortalCENPX
OASIS PortalCENPX [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCENPX
BioMutasearch CENPX
DgiDB (Drug Gene Interaction Database)CENPX
DoCM (Curated mutations)CENPX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CENPX (select a term)
intoGenCENPX
Cancer3DCENPX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615128   
Orphanet
MedgenCENPX
Genetic Testing Registry CENPX
NextProtA8MT69 [Medical]
TSGene201254
GENETestsCENPX
Target ValidationCENPX
Huge Navigator CENPX [HugePedia]
snp3D : Map Gene to Disease201254
BioCentury BCIQCENPX
ClinGenCENPX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201254
Chemical/Pharm GKB GenePA36223
Clinical trialCENPX
Miscellaneous
canSAR (ICR)CENPX (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCENPX
EVEXCENPX
GoPubMedCENPX
iHOPCENPX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:57 CEST 2017

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