Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CEP104 (centrosomal protein 104)

Identity

Alias_namesKIAA0562
KIAA0562
centrosomal protein 104kDa
Alias_symbol (synonym)GlyBP
RP1-286D6.4
CFAP256
ROC22
JBTS25
Other alias
HGNC (Hugo) CEP104
LocusID (NCBI) 9731
Atlas_Id 41060
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3812081 and ends at 3857233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TP73 (1p36.32) / CEP104 (1p36.32)TP73 1p36.32 / CEP104 1p36.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  TP73/CEP104 (1p36)

External links

Nomenclature
HGNC (Hugo)CEP104   24866
Cards
Entrez_Gene (NCBI)CEP104  9731  centrosomal protein 104
AliasesCFAP256; GlyBP; JBTS25; KIAA0562; 
ROC22
GeneCards (Weizmann)CEP104
Ensembl hg19 (Hinxton)ENSG00000116198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116198 [Gene_View]  ENSG00000116198 [Sequence]  chr1:3812081-3857233 [Contig_View]  CEP104 [Vega]
ICGC DataPortalENSG00000116198
TCGA cBioPortalCEP104
AceView (NCBI)CEP104
Genatlas (Paris)CEP104
WikiGenes9731
SOURCE (Princeton)CEP104
Genetics Home Reference (NIH)CEP104
Genomic and cartography
GoldenPath hg38 (UCSC)CEP104  -     chr1:3812081-3857233 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP104  -     1p36.32   [Description]    (hg19-Feb_2009)
GoldenPathCEP104 - 1p36.32 [CytoView hg19]  CEP104 - 1p36.32 [CytoView hg38]
ImmunoBaseENSG00000116198
Mapping of homologs : NCBICEP104 [Mapview hg19]  CEP104 [Mapview hg38]
OMIM616690   616781   
Gene and transcription
Genbank (Entrez)AB011134 AK302190 AK308191 BC001640 BC026020
RefSeq transcript (Entrez)NM_014704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP104
Cluster EST : UnigeneHs.509017 [ NCBI ]
CGAP (NCI)Hs.509017
Alternative Splicing GalleryENSG00000116198
Gene ExpressionCEP104 [ NCBI-GEO ]   CEP104 [ EBI - ARRAY_EXPRESS ]   CEP104 [ SEEK ]   CEP104 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP104 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9731
GTEX Portal (Tissue expression)CEP104
Human Protein AtlasENSG00000116198-CEP104 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60308   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60308  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60308
Splice isoforms : SwissVarO60308
PhosPhoSitePlusO60308
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Galactose-bd-like_sf    TOG   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TOG (SM01349)  
Conserved Domain (NCBI)CEP104
DMDM Disease mutations9731
Blocks (Seattle)CEP104
PDB (RSDB)5LPH    5LPI   
PDB Europe5LPH    5LPI   
PDB (PDBSum)5LPH    5LPI   
PDB (IMB)5LPH    5LPI   
Structural Biology KnowledgeBase5LPH    5LPI   
SCOP (Structural Classification of Proteins)5LPH    5LPI   
CATH (Classification of proteins structures)5LPH    5LPI   
SuperfamilyO60308
Human Protein Atlas [tissue]ENSG00000116198-CEP104 [tissue]
Peptide AtlasO60308
HPRD11091
IPIIPI00006014   IPI00384358   IPI00607758   IPI00514613   IPI00514136   IPI00641323   
Protein Interaction databases
DIP (DOE-UCLA)O60308
IntAct (EBI)O60308
FunCoupENSG00000116198
BioGRIDCEP104
STRING (EMBL)CEP104
ZODIACCEP104
Ontologies - Pathways
QuickGOO60308
Ontology : AmiGOspindle pole  protein binding  centriole  cilium  glycine binding  glutamate binding  thienylcyclohexylpiperidine binding  
Ontology : EGO-EBIspindle pole  protein binding  centriole  cilium  glycine binding  glutamate binding  thienylcyclohexylpiperidine binding  
NDEx NetworkCEP104
Atlas of Cancer Signalling NetworkCEP104
Wikipedia pathwaysCEP104
Orthology - Evolution
OrthoDB9731
GeneTree (enSembl)ENSG00000116198
Phylogenetic Trees/Animal Genes : TreeFamCEP104
HOGENOMO60308
Homologs : HomoloGeneCEP104
Homology/Alignments : Family Browser (UCSC)CEP104
Gene fusions - Rearrangements
Fusion : MitelmanTP73/CEP104 [1p36.32/1p36.32]  [t(1;1)(p36;p36)]  
Fusion PortalTP73 1p36.32 CEP104 1p36.32 LGG
Fusion : QuiverCEP104
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP104 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP104
dbVarCEP104
ClinVarCEP104
1000_GenomesCEP104 
Exome Variant ServerCEP104
ExAC (Exome Aggregation Consortium)ENSG00000116198
GNOMAD BrowserENSG00000116198
Varsome BrowserCEP104
Genetic variants : HAPMAP9731
Genomic Variants (DGV)CEP104 [DGVbeta]
DECIPHERCEP104 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP104 
Mutations
ICGC Data PortalCEP104 
TCGA Data PortalCEP104 
Broad Tumor PortalCEP104
OASIS PortalCEP104 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP104  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCEP104
Mutations and Diseases : HGMDCEP104
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP104
DgiDB (Drug Gene Interaction Database)CEP104
DoCM (Curated mutations)CEP104 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP104 (select a term)
intoGenCEP104
Cancer3DCEP104(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616690    616781   
Orphanet1022   
DisGeNETCEP104
MedgenCEP104
Genetic Testing Registry CEP104
NextProtO60308 [Medical]
TSGene9731
GENETestsCEP104
Target ValidationCEP104
Huge Navigator CEP104 [HugePedia]
snp3D : Map Gene to Disease9731
BioCentury BCIQCEP104
ClinGenCEP104
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9731
Chemical/Pharm GKB GenePA144596418
Clinical trialCEP104
Miscellaneous
canSAR (ICR)CEP104 (select the gene name)
DataMed IndexCEP104
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP104
EVEXCEP104
GoPubMedCEP104
iHOPCEP104
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:36:52 CET 2019
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