Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEP162 (centrosomal protein 162)

Identity

Alias_namesC6orf84
KIAA1009
chromosome 6 open reading frame 84
KIAA1009
centrosomal protein 162kDa
Alias_symbol (synonym)QN1
Other alias
HGNC (Hugo) CEP162
LocusID (NCBI) 22832
Atlas_Id 61719
Location 6q14.2  [Link to chromosome band 6q14]
Location_base_pair Starts at 84124241 and ends at 84227635 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP162   21107
Cards
Entrez_Gene (NCBI)CEP162  22832  centrosomal protein 162
AliasesC6orf84; KIAA1009; QN1
GeneCards (Weizmann)CEP162
Ensembl hg19 (Hinxton)ENSG00000135315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135315 [Gene_View]  chr6:84124241-84227635 [Contig_View]  CEP162 [Vega]
ICGC DataPortalENSG00000135315
TCGA cBioPortalCEP162
AceView (NCBI)CEP162
Genatlas (Paris)CEP162
WikiGenes22832
SOURCE (Princeton)CEP162
Genetics Home Reference (NIH)CEP162
Genomic and cartography
GoldenPath hg38 (UCSC)CEP162  -     chr6:84124241-84227635 -  6q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP162  -     6q14.2   [Description]    (hg19-Feb_2009)
EnsemblCEP162 - 6q14.2 [CytoView hg19]  CEP162 - 6q14.2 [CytoView hg38]
Mapping of homologs : NCBICEP162 [Mapview hg19]  CEP162 [Mapview hg38]
OMIM610201   
Gene and transcription
Genbank (Entrez)AB023226 AK023613 AK308190 AW069289 BC063632
RefSeq transcript (Entrez)NM_001286206 NM_014895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP162
Cluster EST : UnigeneHs.485865 [ NCBI ]
CGAP (NCI)Hs.485865
Alternative Splicing GalleryENSG00000135315
Gene ExpressionCEP162 [ NCBI-GEO ]   CEP162 [ EBI - ARRAY_EXPRESS ]   CEP162 [ SEEK ]   CEP162 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP162 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22832
GTEX Portal (Tissue expression)CEP162
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TB80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TB80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TB80
Splice isoforms : SwissVarQ5TB80
PhosPhoSitePlusQ5TB80
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CEP162
DMDM Disease mutations22832
Blocks (Seattle)CEP162
SuperfamilyQ5TB80
Human Protein AtlasENSG00000135315
Peptide AtlasQ5TB80
HPRD10796
IPIIPI00007122   IPI00854578   IPI00855839   
Protein Interaction databases
DIP (DOE-UCLA)Q5TB80
IntAct (EBI)Q5TB80
FunCoupENSG00000135315
BioGRIDCEP162
STRING (EMBL)CEP162
ZODIACCEP162
Ontologies - Pathways
QuickGOQ5TB80
Ontology : AmiGOprotein binding  nucleus  centrosome  centriole  spindle  cytosol  axonemal microtubule  cilium assembly  ciliary basal body docking  
Ontology : EGO-EBIprotein binding  nucleus  centrosome  centriole  spindle  cytosol  axonemal microtubule  cilium assembly  ciliary basal body docking  
NDEx NetworkCEP162
Atlas of Cancer Signalling NetworkCEP162
Wikipedia pathwaysCEP162
Orthology - Evolution
OrthoDB22832
GeneTree (enSembl)ENSG00000135315
Phylogenetic Trees/Animal Genes : TreeFamCEP162
HOVERGENQ5TB80
HOGENOMQ5TB80
Homologs : HomoloGeneCEP162
Homology/Alignments : Family Browser (UCSC)CEP162
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP162 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP162
dbVarCEP162
ClinVarCEP162
1000_GenomesCEP162 
Exome Variant ServerCEP162
ExAC (Exome Aggregation Consortium)CEP162 (select the gene name)
Genetic variants : HAPMAP22832
Genomic Variants (DGV)CEP162 [DGVbeta]
DECIPHERCEP162 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP162 
Mutations
ICGC Data PortalCEP162 
TCGA Data PortalCEP162 
Broad Tumor PortalCEP162
OASIS PortalCEP162 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCEP162
BioMutasearch CEP162
DgiDB (Drug Gene Interaction Database)CEP162
DoCM (Curated mutations)CEP162 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP162 (select a term)
intoGenCEP162
Cancer3DCEP162(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610201   
Orphanet
MedgenCEP162
Genetic Testing Registry CEP162
NextProtQ5TB80 [Medical]
TSGene22832
GENETestsCEP162
Huge Navigator CEP162 [HugePedia]
snp3D : Map Gene to Disease22832
BioCentury BCIQCEP162
ClinGenCEP162
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22832
Chemical/Pharm GKB GenePA134972331
Clinical trialCEP162
Miscellaneous
canSAR (ICR)CEP162 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP162
EVEXCEP162
GoPubMedCEP162
iHOPCEP162
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:05:33 CEST 2017

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