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CEP20 (centrosomal protein 20)

Identity

Alias (NCBI)C16orf63
FOPNL
FOR20
PHSECRG2
HGNC (Hugo) CEP20
HGNC Alias symbDKFZp686N1651
FLJ31153
PHSECRG2
FOR20
HGNC Alias namepluripotent embryonic stem cell-related protein
 FOP-related protein of 20 kDa
HGNC Previous nameC16orf63
HGNC Previous namechromosome 16 open reading frame 63
LocusID (NCBI) 123811
Atlas_Id 63559
Location 16p13.11  [Link to chromosome band 16p13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CEP20   26435
Cards
Entrez_Gene (NCBI)CEP20  123811  centrosomal protein 20
AliasesC16orf63; FOPNL; FOR20; PHSECRG2
GeneCards (Weizmann)CEP20
Ensembl hg19 (Hinxton)ENSG00000133393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133393 [Gene_View]  ENSG00000133393 [Sequence]  - [Contig_View]  CEP20 [Vega]
ICGC DataPortalENSG00000133393
TCGA cBioPortalCEP20
AceView (NCBI)CEP20
Genatlas (Paris)CEP20
WikiGenes123811
SOURCE (Princeton)CEP20
Genetics Home Reference (NIH)CEP20
Genomic and cartography
GoldenPath hg38 (UCSC)CEP20  -  
GoldenPath hg19 (UCSC)CEP20  -  
GoldenPathCEP20 - [CytoView hg19]  CEP20 - [CytoView hg38]
ImmunoBaseENSG00000133393
genome Data Viewer NCBICEP20 [Mapview hg19]  
OMIM617149   
Gene and transcription
Genbank (Entrez)AK055715 AK056798 AL832498 AY507846 BC022321
RefSeq transcript (Entrez)NM_001304497 NM_001304498 NM_001304499 NM_001304500 NM_001304502 NM_144600
RefSeq genomic (Entrez)NC_000016 NT_187607
Consensus coding sequences : CCDS (NCBI)CEP20
Alternative Splicing GalleryENSG00000133393
Gene ExpressionCEP20 [ NCBI-GEO ]   CEP20 [ EBI - ARRAY_EXPRESS ]   CEP20 [ SEEK ]   CEP20 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP20 [ Firebrowse - Broad ]
GenevisibleExpression of CEP20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123811
GTEX Portal (Tissue expression)CEP20
Human Protein AtlasENSG00000133393-CEP20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NB1
Splice isoforms : SwissVarQ96NB1
PhosPhoSitePlusQ96NB1
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)FOP_dimerisation-dom_N    LisH   
Domain families : Pfam (Sanger)FOP_dimer (PF09398)   
Domain families : Pfam (NCBI)pfam09398   
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)CEP20
DMDM Disease mutations123811
Blocks (Seattle)CEP20
SuperfamilyQ96NB1
Human Protein Atlas [tissue]ENSG00000133393-CEP20 [tissue]
Peptide AtlasQ96NB1
HPRD08096
IPIIPI00043563   IPI00643725   
Protein Interaction databases
DIP (DOE-UCLA)Q96NB1
IntAct (EBI)Q96NB1
FunCoupENSG00000133393
BioGRIDCEP20
STRING (EMBL)CEP20
ZODIACCEP20
Ontologies - Pathways
QuickGOQ96NB1
Ontology : AmiGOnucleoplasm  cytoplasm  centrosome  centriole  motile cilium  centriolar satellite  microtubule anchoring  ciliary basal body  cilium assembly  
Ontology : EGO-EBInucleoplasm  cytoplasm  centrosome  centriole  motile cilium  centriolar satellite  microtubule anchoring  ciliary basal body  cilium assembly  
NDEx NetworkCEP20
Atlas of Cancer Signalling NetworkCEP20
Wikipedia pathwaysCEP20
Orthology - Evolution
OrthoDB123811
GeneTree (enSembl)ENSG00000133393
Phylogenetic Trees/Animal Genes : TreeFamCEP20
HOGENOMQ96NB1
Homologs : HomoloGeneCEP20
Homology/Alignments : Family Browser (UCSC)CEP20
Gene fusions - Rearrangements
Fusion : QuiverCEP20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP20
dbVarCEP20
ClinVarCEP20
1000_GenomesCEP20 
Exome Variant ServerCEP20
GNOMAD BrowserENSG00000133393
Varsome BrowserCEP20
Genetic variants : HAPMAP123811
Genomic Variants (DGV)CEP20 [DGVbeta]
DECIPHERCEP20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP20 
Mutations
ICGC Data PortalCEP20 
TCGA Data PortalCEP20 
Broad Tumor PortalCEP20
OASIS PortalCEP20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCEP20
Mutations and Diseases : HGMDCEP20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP20
DgiDB (Drug Gene Interaction Database)CEP20
DoCM (Curated mutations)CEP20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP20 (select a term)
intoGenCEP20
Cancer3DCEP20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617149   
Orphanet
DisGeNETCEP20
MedgenCEP20
Genetic Testing Registry CEP20
NextProtQ96NB1 [Medical]
TSGene123811
GENETestsCEP20
Target ValidationCEP20
Huge Navigator CEP20 [HugePedia]
snp3D : Map Gene to Disease123811
BioCentury BCIQCEP20
ClinGenCEP20
Clinical trials, drugs, therapy
Protein Interactions : CTD123811
Pharm GKB GenePA143485399
Clinical trialCEP20
Miscellaneous
canSAR (ICR)CEP20 (select the gene name)
HarmonizomeCEP20
DataMed IndexCEP20
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP20
EVEXCEP20
GoPubMedCEP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:03:11 CEST 2020

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