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CEP55 (centrosomal protein 55)

Identity

Alias_namesC10orf3
chromosome 10 open reading frame 3
centrosomal protein 55kDa
Alias_symbol (synonym)FLJ10540
CT111
Other aliasURCC6
HGNC (Hugo) CEP55
LocusID (NCBI) 55165
Atlas_Id 47698
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93496612 and ends at 93529092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEP55 (10q23.33) / IVNS1ABP (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP55   1161
Cards
Entrez_Gene (NCBI)CEP55  55165  centrosomal protein 55
AliasesC10orf3; CT111; URCC6
GeneCards (Weizmann)CEP55
Ensembl hg19 (Hinxton)ENSG00000138180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138180 [Gene_View]  chr10:93496612-93529092 [Contig_View]  CEP55 [Vega]
ICGC DataPortalENSG00000138180
TCGA cBioPortalCEP55
AceView (NCBI)CEP55
Genatlas (Paris)CEP55
WikiGenes55165
SOURCE (Princeton)CEP55
Genetics Home Reference (NIH)CEP55
Genomic and cartography
GoldenPath hg38 (UCSC)CEP55  -     chr10:93496612-93529092 +  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP55  -     10q23.33   [Description]    (hg19-Feb_2009)
EnsemblCEP55 - 10q23.33 [CytoView hg19]  CEP55 - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBICEP55 [Mapview hg19]  CEP55 [Mapview hg38]
OMIM610000   
Gene and transcription
Genbank (Entrez)AB091343 AK001402 AK223495 AK315536 AY788918
RefSeq transcript (Entrez)NM_001127182 NM_018131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP55
Cluster EST : UnigeneHs.14559 [ NCBI ]
CGAP (NCI)Hs.14559
Alternative Splicing GalleryENSG00000138180
Gene ExpressionCEP55 [ NCBI-GEO ]   CEP55 [ EBI - ARRAY_EXPRESS ]   CEP55 [ SEEK ]   CEP55 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55165
GTEX Portal (Tissue expression)CEP55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53EZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53EZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53EZ4
Splice isoforms : SwissVarQ53EZ4
PhosPhoSitePlusQ53EZ4
Domains : Interpro (EBI)EABR   
Domain families : Pfam (Sanger)EABR (PF12180)   
Domain families : Pfam (NCBI)pfam12180   
Conserved Domain (NCBI)CEP55
DMDM Disease mutations55165
Blocks (Seattle)CEP55
PDB (SRS)3E1R    3WUT    3WUU    3WUV   
PDB (PDBSum)3E1R    3WUT    3WUU    3WUV   
PDB (IMB)3E1R    3WUT    3WUU    3WUV   
PDB (RSDB)3E1R    3WUT    3WUU    3WUV   
Structural Biology KnowledgeBase3E1R    3WUT    3WUU    3WUV   
SCOP (Structural Classification of Proteins)3E1R    3WUT    3WUU    3WUV   
CATH (Classification of proteins structures)3E1R    3WUT    3WUU    3WUV   
SuperfamilyQ53EZ4
Human Protein AtlasENSG00000138180
Peptide AtlasQ53EZ4
HPRD12569
IPIIPI00101532   IPI00478943   IPI01012893   IPI00478215   
Protein Interaction databases
DIP (DOE-UCLA)Q53EZ4
IntAct (EBI)Q53EZ4
FunCoupENSG00000138180
BioGRIDCEP55
STRING (EMBL)CEP55
ZODIACCEP55
Ontologies - Pathways
QuickGOQ53EZ4
Ontology : AmiGOmitotic cytokinesis  cell separation after cytokinesis  protein binding  centrosome  centriole  microtubule organizing center  plasma membrane  nucleus organization  mitotic metaphase plate congression  membrane  midbody  cleavage furrow  intercellular bridge  establishment of protein localization  
Ontology : EGO-EBImitotic cytokinesis  cell separation after cytokinesis  protein binding  centrosome  centriole  microtubule organizing center  plasma membrane  nucleus organization  mitotic metaphase plate congression  membrane  midbody  cleavage furrow  intercellular bridge  establishment of protein localization  
NDEx NetworkCEP55
Atlas of Cancer Signalling NetworkCEP55
Wikipedia pathwaysCEP55
Orthology - Evolution
OrthoDB55165
GeneTree (enSembl)ENSG00000138180
Phylogenetic Trees/Animal Genes : TreeFamCEP55
HOVERGENQ53EZ4
HOGENOMQ53EZ4
Homologs : HomoloGeneCEP55
Homology/Alignments : Family Browser (UCSC)CEP55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP55
dbVarCEP55
ClinVarCEP55
1000_GenomesCEP55 
Exome Variant ServerCEP55
ExAC (Exome Aggregation Consortium)CEP55 (select the gene name)
Genetic variants : HAPMAP55165
Genomic Variants (DGV)CEP55 [DGVbeta]
DECIPHERCEP55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP55 
Mutations
ICGC Data PortalCEP55 
TCGA Data PortalCEP55 
Broad Tumor PortalCEP55
OASIS PortalCEP55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP55
DgiDB (Drug Gene Interaction Database)CEP55
DoCM (Curated mutations)CEP55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP55 (select a term)
intoGenCEP55
Cancer3DCEP55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610000   
Orphanet
MedgenCEP55
Genetic Testing Registry CEP55
NextProtQ53EZ4 [Medical]
TSGene55165
GENETestsCEP55
Target ValidationCEP55
Huge Navigator CEP55 [HugePedia]
snp3D : Map Gene to Disease55165
BioCentury BCIQCEP55
ClinGenCEP55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55165
Chemical/Pharm GKB GenePA25475
Clinical trialCEP55
Miscellaneous
canSAR (ICR)CEP55 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP55
EVEXCEP55
GoPubMedCEP55
iHOPCEP55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:38 CEST 2017

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