Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CEP63 (centrosomal protein 63)

Identity

Alias (NCBI)SCKL6
HGNC (Hugo) CEP63
HGNC Alias symbFLJ13386
HGNC Previous namecentrosomal protein 63kDa
LocusID (NCBI) 80254
Atlas_Id 46318
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134486173 and ends at 134565028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEP63 (3q22.2) / GOLGB1 (3q13.33)USP2 (11q23.3) / CEP63 (3q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CEP63   25815
Cards
Entrez_Gene (NCBI)CEP63    centrosomal protein 63
AliasesSCKL6
GeneCards (Weizmann)CEP63
Ensembl hg19 (Hinxton)ENSG00000182923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182923 [Gene_View]  ENSG00000182923 [Sequence]  chr3:134486173-134565028 [Contig_View]  CEP63 [Vega]
ICGC DataPortalENSG00000182923
TCGA cBioPortalCEP63
AceView (NCBI)CEP63
Genatlas (Paris)CEP63
SOURCE (Princeton)CEP63
Genetics Home Reference (NIH)CEP63
Genomic and cartography
GoldenPath hg38 (UCSC)CEP63  -     chr3:134486173-134565028 +  3q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP63  -     3q22.2   [Description]    (hg19-Feb_2009)
GoldenPathCEP63 - 3q22.2 [CytoView hg19]  CEP63 - 3q22.2 [CytoView hg38]
ImmunoBaseENSG00000182923
genome Data Viewer NCBICEP63 [Mapview hg19]  
OMIM614724   614728   
Gene and transcription
Genbank (Entrez)AA746981 AF113697 AK023448 AK023738 AK054897
RefSeq transcript (Entrez)NM_001042383 NM_001042384 NM_001042400 NM_001353108 NM_001353109 NM_001353110 NM_001353111 NM_001353112 NM_001353113 NM_001353117 NM_001353118 NM_001353119 NM_001353120 NM_001353121 NM_001353122 NM_001353123 NM_001353124 NM_001353125 NM_001353126 NM_025180
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP63
Alternative Splicing GalleryENSG00000182923
Gene ExpressionCEP63 [ NCBI-GEO ]   CEP63 [ EBI - ARRAY_EXPRESS ]   CEP63 [ SEEK ]   CEP63 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP63 [ Firebrowse - Broad ]
GenevisibleExpression of CEP63 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80254
GTEX Portal (Tissue expression)CEP63
Human Protein AtlasENSG00000182923-CEP63 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MT8
Splice isoforms : SwissVarQ96MT8
PhosPhoSitePlusQ96MT8
Domains : Interpro (EBI)Cep63    Cep63/Deup1_N   
Domain families : Pfam (Sanger)CEP63 (PF17045)   
Domain families : Pfam (NCBI)pfam17045   
Conserved Domain (NCBI)CEP63
Blocks (Seattle)CEP63
PDB (RSDB)6CSU    6CSV   
PDB Europe6CSU    6CSV   
PDB (PDBSum)6CSU    6CSV   
PDB (IMB)6CSU    6CSV   
Structural Biology KnowledgeBase6CSU    6CSV   
SCOP (Structural Classification of Proteins)6CSU    6CSV   
CATH (Classification of proteins structures)6CSU    6CSV   
SuperfamilyQ96MT8
Human Protein Atlas [tissue]ENSG00000182923-CEP63 [tissue]
Peptide AtlasQ96MT8
HPRD07826
IPIIPI00043373   IPI00018708   IPI00060568   IPI00041779   IPI00790029   IPI00966454   IPI00967932   IPI00967683   IPI00966747   
Protein Interaction databases
DIP (DOE-UCLA)Q96MT8
IntAct (EBI)Q96MT8
BioGRIDCEP63
STRING (EMBL)CEP63
ZODIACCEP63
Ontologies - Pathways
QuickGOQ96MT8
Ontology : AmiGODNA damage checkpoint  G2/M transition of mitotic cell cycle  spindle pole  protein binding  centrosome  centriole  centriole  cytosol  centriole replication  centriole replication  centriole replication  regulation of G2/M transition of mitotic cell cycle  signal transduction in response to DNA damage  spindle assembly  cell division  ciliary basal body-plasma membrane docking  de novo centriole assembly involved in multi-ciliated epithelial cell differentiation  
Ontology : EGO-EBIDNA damage checkpoint  G2/M transition of mitotic cell cycle  spindle pole  protein binding  centrosome  centriole  centriole  cytosol  centriole replication  centriole replication  centriole replication  regulation of G2/M transition of mitotic cell cycle  signal transduction in response to DNA damage  spindle assembly  cell division  ciliary basal body-plasma membrane docking  de novo centriole assembly involved in multi-ciliated epithelial cell differentiation  
NDEx NetworkCEP63
Atlas of Cancer Signalling NetworkCEP63
Wikipedia pathwaysCEP63
Orthology - Evolution
OrthoDB80254
GeneTree (enSembl)ENSG00000182923
Phylogenetic Trees/Animal Genes : TreeFamCEP63
HOGENOMQ96MT8
Homologs : HomoloGeneCEP63
Homology/Alignments : Family Browser (UCSC)CEP63
Gene fusions - Rearrangements
Fusion : QuiverCEP63
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP63 [hg38]
dbVarCEP63
ClinVarCEP63
MonarchCEP63
1000_GenomesCEP63 
Exome Variant ServerCEP63
GNOMAD BrowserENSG00000182923
Varsome BrowserCEP63
Genomic Variants (DGV)CEP63 [DGVbeta]
DECIPHERCEP63 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP63 
Mutations
ICGC Data PortalCEP63 
TCGA Data PortalCEP63 
Broad Tumor PortalCEP63
OASIS PortalCEP63 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP63  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCEP63
Mutations and Diseases : HGMDCEP63
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP63
DgiDB (Drug Gene Interaction Database)CEP63
DoCM (Curated mutations)CEP63 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP63 (select a term)
intoGenCEP63
Cancer3DCEP63(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614724    614728   
Orphanet732   
DisGeNETCEP63
MedgenCEP63
Genetic Testing Registry CEP63
NextProtQ96MT8 [Medical]
GENETestsCEP63
Target ValidationCEP63
Huge Navigator CEP63 [HugePedia]
ClinGenCEP63
Clinical trials, drugs, therapy
MyCancerGenomeCEP63
Protein Interactions : CTD
Pharm GKB GenePA142672124
PharosQ96MT8
Clinical trialCEP63
Miscellaneous
canSAR (ICR)CEP63 (select the gene name)
HarmonizomeCEP63
DataMed IndexCEP63
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCEP63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:09:41 CET 2021
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