Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEP76 (centrosomal protein 76)

Identity

Alias_namesC18orf9
chromosome 18 open reading frame 9
centrosomal protein 76kDa
Alias_symbol (synonym)HsT1705
FLJ12542
Other alias
HGNC (Hugo) CEP76
LocusID (NCBI) 79959
Atlas_Id 53572
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12672627 and ends at 12702777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RUNX1 (21q22.12) / CEP76 (18p11.21)RUNX1 21q22.12 / CEP76 18p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP76   25727
Cards
Entrez_Gene (NCBI)CEP76  79959  centrosomal protein 76
AliasesC18orf9; HsT1705
GeneCards (Weizmann)CEP76
Ensembl hg19 (Hinxton)ENSG00000101624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101624 [Gene_View]  chr18:12672627-12702777 [Contig_View]  CEP76 [Vega]
ICGC DataPortalENSG00000101624
TCGA cBioPortalCEP76
AceView (NCBI)CEP76
Genatlas (Paris)CEP76
WikiGenes79959
SOURCE (Princeton)CEP76
Genetics Home Reference (NIH)CEP76
Genomic and cartography
GoldenPath hg38 (UCSC)CEP76  -     chr18:12672627-12702777 -  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP76  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblCEP76 - 18p11.21 [CytoView hg19]  CEP76 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBICEP76 [Mapview hg19]  CEP76 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022604 AK298223 AK301964 AK303117 AL833727
RefSeq transcript (Entrez)NM_001271989 NM_024899
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP76
Cluster EST : UnigeneHs.236940 [ NCBI ]
CGAP (NCI)Hs.236940
Alternative Splicing GalleryENSG00000101624
Gene ExpressionCEP76 [ NCBI-GEO ]   CEP76 [ EBI - ARRAY_EXPRESS ]   CEP76 [ SEEK ]   CEP76 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP76 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79959
GTEX Portal (Tissue expression)CEP76
Human Protein AtlasENSG00000101624-CEP76 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAP6
Splice isoforms : SwissVarQ8TAP6
PhosPhoSitePlusQ8TAP6
Domains : Interpro (EBI)CEP76-C2   
Domain families : Pfam (Sanger)CEP76-C2 (PF15627)   
Domain families : Pfam (NCBI)pfam15627   
Conserved Domain (NCBI)CEP76
DMDM Disease mutations79959
Blocks (Seattle)CEP76
SuperfamilyQ8TAP6
Human Protein Atlas [tissue]ENSG00000101624-CEP76 [tissue]
Peptide AtlasQ8TAP6
HPRD12694
IPIIPI00154553   IPI00642360   IPI00640272   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAP6
IntAct (EBI)Q8TAP6
FunCoupENSG00000101624
BioGRIDCEP76
STRING (EMBL)CEP76
ZODIACCEP76
Ontologies - Pathways
QuickGOQ8TAP6
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  protein complex  regulation of centriole replication  ciliary basal body docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  protein complex  regulation of centriole replication  ciliary basal body docking  
NDEx NetworkCEP76
Atlas of Cancer Signalling NetworkCEP76
Wikipedia pathwaysCEP76
Orthology - Evolution
OrthoDB79959
GeneTree (enSembl)ENSG00000101624
Phylogenetic Trees/Animal Genes : TreeFamCEP76
HOVERGENQ8TAP6
HOGENOMQ8TAP6
Homologs : HomoloGeneCEP76
Homology/Alignments : Family Browser (UCSC)CEP76
Gene fusions - Rearrangements
Fusion : MitelmanRUNX1/CEP76 [21q22.12/18p11.21]  [t(18;21)(p11;q22)]  
Fusion: TCGA_MDACCRUNX1 21q22.12 CEP76 18p11.21 LUAD
Tumor Fusion PortalCEP76
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP76 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP76
dbVarCEP76
ClinVarCEP76
1000_GenomesCEP76 
Exome Variant ServerCEP76
ExAC (Exome Aggregation Consortium)ENSG00000101624
GNOMAD BrowserENSG00000101624
Genetic variants : HAPMAP79959
Genomic Variants (DGV)CEP76 [DGVbeta]
DECIPHERCEP76 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP76 
Mutations
ICGC Data PortalCEP76 
TCGA Data PortalCEP76 
Broad Tumor PortalCEP76
OASIS PortalCEP76 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP76  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP76
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP76
DgiDB (Drug Gene Interaction Database)CEP76
DoCM (Curated mutations)CEP76 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP76 (select a term)
intoGenCEP76
Cancer3DCEP76(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCEP76
MedgenCEP76
Genetic Testing Registry CEP76
NextProtQ8TAP6 [Medical]
TSGene79959
GENETestsCEP76
Target ValidationCEP76
Huge Navigator CEP76 [HugePedia]
snp3D : Map Gene to Disease79959
BioCentury BCIQCEP76
ClinGenCEP76
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79959
Chemical/Pharm GKB GenePA134916911
Clinical trialCEP76
Miscellaneous
canSAR (ICR)CEP76 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP76
EVEXCEP76
GoPubMedCEP76
iHOPCEP76
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:07:23 CET 2017

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