Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CEP78 (centrosomal protein 78)

Identity

Other aliasC9orf81
CRDHL
IP63
HGNC (Hugo) CEP78
LocusID (NCBI) 84131
Atlas_Id 56800
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 78236062 and ends at 78267075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEP78 (9q21.2) / EIF4G3 (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP78   25740
Cards
Entrez_Gene (NCBI)CEP78  84131  centrosomal protein 78
AliasesC9orf81; CRDHL; IP63
GeneCards (Weizmann)CEP78
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:78236062-78267075 [Contig_View]  CEP78 [Vega]
TCGA cBioPortalCEP78
AceView (NCBI)CEP78
Genatlas (Paris)CEP78
WikiGenes84131
SOURCE (Princeton)CEP78
Genetics Home Reference (NIH)CEP78
Genomic and cartography
GoldenPath hg38 (UCSC)CEP78  -     chr9:78236062-78267075 +  9q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP78  -     9q21.2   [Description]    (hg19-Feb_2009)
EnsemblCEP78 - 9q21.2 [CytoView hg19]  CEP78 - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBICEP78 [Mapview hg19]  CEP78 [Mapview hg38]
OMIM617110   617236   
Gene and transcription
Genbank (Entrez)AK022705 AK303457 BC058931 BC091515 BC128058
RefSeq transcript (Entrez)NM_001098802 NM_001330691 NM_001330693 NM_001330694 NM_001349838 NM_001349839 NM_001349840 NM_032171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP78
Cluster EST : UnigeneHs.374421 [ NCBI ]
CGAP (NCI)Hs.374421
Gene ExpressionCEP78 [ NCBI-GEO ]   CEP78 [ EBI - ARRAY_EXPRESS ]   CEP78 [ SEEK ]   CEP78 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84131
GTEX Portal (Tissue expression)CEP78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTW2
Splice isoforms : SwissVarQ5JTW2
PhosPhoSitePlusQ5JTW2
Domains : Interpro (EBI)Cep78    L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)CEP78
DMDM Disease mutations84131
Blocks (Seattle)CEP78
SuperfamilyQ5JTW2
Peptide AtlasQ5JTW2
IPIIPI00249529   IPI00647080   IPI00942857   IPI00640133   IPI01010520   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTW2
IntAct (EBI)Q5JTW2
BioGRIDCEP78
STRING (EMBL)CEP78
ZODIACCEP78
Ontologies - Pathways
QuickGOQ5JTW2
Ontology : AmiGOG2/M transition of mitotic cell cycle  centrosome  centriole  cytosol  ciliary basal body  cilium organization  ciliary basal body docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  centrosome  centriole  cytosol  ciliary basal body  cilium organization  ciliary basal body docking  
NDEx NetworkCEP78
Atlas of Cancer Signalling NetworkCEP78
Wikipedia pathwaysCEP78
Orthology - Evolution
OrthoDB84131
Phylogenetic Trees/Animal Genes : TreeFamCEP78
HOVERGENQ5JTW2
HOGENOMQ5JTW2
Homologs : HomoloGeneCEP78
Homology/Alignments : Family Browser (UCSC)CEP78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP78
dbVarCEP78
ClinVarCEP78
1000_GenomesCEP78 
Exome Variant ServerCEP78
ExAC (Exome Aggregation Consortium)CEP78 (select the gene name)
Genetic variants : HAPMAP84131
Genomic Variants (DGV)CEP78 [DGVbeta]
DECIPHERCEP78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP78 
Mutations
ICGC Data PortalCEP78 
TCGA Data PortalCEP78 
Broad Tumor PortalCEP78
OASIS PortalCEP78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP78
BioMutasearch CEP78
DgiDB (Drug Gene Interaction Database)CEP78
DoCM (Curated mutations)CEP78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP78 (select a term)
intoGenCEP78
Cancer3DCEP78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617110    617236   
Orphanet
MedgenCEP78
Genetic Testing Registry CEP78
NextProtQ5JTW2 [Medical]
TSGene84131
GENETestsCEP78
Target ValidationCEP78
Huge Navigator CEP78 [HugePedia]
snp3D : Map Gene to Disease84131
BioCentury BCIQCEP78
ClinGenCEP78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84131
Chemical/Pharm GKB GenePA134937066
Clinical trialCEP78
Miscellaneous
canSAR (ICR)CEP78 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP78
EVEXCEP78
GoPubMedCEP78
iHOPCEP78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:37 CEST 2017

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