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CEP78 (centrosomal protein 78kDa)

Identity

Alias_namesC9orf81
chromosome 9 open reading frame 81
centrosomal protein 78kDa
Alias_symbol (synonym)FLJ12643
Other aliasIP63
HGNC (Hugo) CEP78
LocusID (NCBI) 84131
Atlas_Id 61730
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 80850991 and ends at 80881983 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP78 (9q21.2) / EIF4G3 (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP78   25740
Cards
Entrez_Gene (NCBI)CEP78  84131  centrosomal protein 78kDa
AliasesC9orf81; IP63
GeneCards (Weizmann)CEP78
Ensembl hg19 (Hinxton)ENSG00000148019 [Gene_View]  chr9:80850991-80881983 [Contig_View]  CEP78 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148019 [Gene_View]  chr9:80850991-80881983 [Contig_View]  CEP78 [Vega]
ICGC DataPortalENSG00000148019
TCGA cBioPortalCEP78
AceView (NCBI)CEP78
Genatlas (Paris)CEP78
WikiGenes84131
SOURCE (Princeton)CEP78
Genetics Home Reference (NIH)CEP78
Genomic and cartography
GoldenPath hg19 (UCSC)CEP78  -     chr9:80850991-80881983 +  9q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CEP78  -     9q21.2   [Description]    (hg38-Dec_2013)
EnsemblCEP78 - 9q21.2 [CytoView hg19]  CEP78 - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBICEP78 [Mapview hg19]  CEP78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022705 AK303457 BC058931 BC091515 BC128058
RefSeq transcript (Entrez)NM_001098802 NM_032171
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)CEP78
Cluster EST : UnigeneHs.374421 [ NCBI ]
CGAP (NCI)Hs.374421
Alternative Splicing GalleryENSG00000148019
Gene ExpressionCEP78 [ NCBI-GEO ]   CEP78 [ EBI - ARRAY_EXPRESS ]   CEP78 [ SEEK ]   CEP78 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84131
GTEX Portal (Tissue expression)CEP78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTW2
Splice isoforms : SwissVarQ5JTW2
PhosPhoSitePlusQ5JTW2
Domains : Interpro (EBI)Cep78   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CEP78
DMDM Disease mutations84131
Blocks (Seattle)CEP78
SuperfamilyQ5JTW2
Human Protein AtlasENSG00000148019
Peptide AtlasQ5JTW2
IPIIPI00249529   IPI00647080   IPI00942857   IPI00640133   IPI01010520   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTW2
IntAct (EBI)Q5JTW2
FunCoupENSG00000148019
BioGRIDCEP78
STRING (EMBL)CEP78
ZODIACCEP78
Ontologies - Pathways
QuickGOQ5JTW2
Ontology : AmiGOG2/M transition of mitotic cell cycle  mitotic cell cycle  centrosome  cytosol  organelle organization  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  mitotic cell cycle  centrosome  cytosol  organelle organization  
NDEx NetworkCEP78
Atlas of Cancer Signalling NetworkCEP78
Wikipedia pathwaysCEP78
Orthology - Evolution
OrthoDB84131
GeneTree (enSembl)ENSG00000148019
Phylogenetic Trees/Animal Genes : TreeFamCEP78
HOVERGENQ5JTW2
HOGENOMQ5JTW2
Homologs : HomoloGeneCEP78
Homology/Alignments : Family Browser (UCSC)CEP78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP78
dbVarCEP78
ClinVarCEP78
1000_GenomesCEP78 
Exome Variant ServerCEP78
ExAC (Exome Aggregation Consortium)CEP78 (select the gene name)
Genetic variants : HAPMAP84131
Genomic Variants (DGV)CEP78 [DGVbeta]
DECIPHER (Syndromes)9:80850991-80881983  ENSG00000148019
CONAN: Copy Number AnalysisCEP78 
Mutations
ICGC Data PortalCEP78 
TCGA Data PortalCEP78 
Broad Tumor PortalCEP78
OASIS PortalCEP78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP78
DgiDB (Drug Gene Interaction Database)CEP78
DoCM (Curated mutations)CEP78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP78 (select a term)
intoGenCEP78
Cancer3DCEP78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEP78
Genetic Testing Registry CEP78
NextProtQ5JTW2 [Medical]
TSGene84131
GENETestsCEP78
Huge Navigator CEP78 [HugePedia]
snp3D : Map Gene to Disease84131
BioCentury BCIQCEP78
ClinGenCEP78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84131
Chemical/Pharm GKB GenePA134937066
Clinical trialCEP78
Miscellaneous
canSAR (ICR)CEP78 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP78
EVEXCEP78
GoPubMedCEP78
iHOPCEP78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:11 CET 2017

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