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CEP85 (centrosomal protein 85kDa)

Identity

Alias_namesCCDC21
coiled-coil domain containing 21
centrosomal protein 85kDa
Alias_symbol (synonym)DKFZP434L0117
Other alias
HGNC (Hugo) CEP85
LocusID (NCBI) 64793
Atlas_Id 61733
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26560644 and ends at 26605529 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP85 (1p36.11) / ADAMTS18 (16q23.1)CEP85 (1p36.11) / FAM110D (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEP85   25309
Cards
Entrez_Gene (NCBI)CEP85  64793  centrosomal protein 85kDa
AliasesCCDC21
GeneCards (Weizmann)CEP85
Ensembl hg19 (Hinxton)ENSG00000130695 [Gene_View]  chr1:26560644-26605529 [Contig_View]  CEP85 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130695 [Gene_View]  chr1:26560644-26605529 [Contig_View]  CEP85 [Vega]
ICGC DataPortalENSG00000130695
TCGA cBioPortalCEP85
AceView (NCBI)CEP85
Genatlas (Paris)CEP85
WikiGenes64793
SOURCE (Princeton)CEP85
Genetics Home Reference (NIH)CEP85
Genomic and cartography
GoldenPath hg19 (UCSC)CEP85  -     chr1:26560644-26605529 +  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CEP85  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblCEP85 - 1p36.11 [CytoView hg19]  CEP85 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBICEP85 [Mapview hg19]  CEP85 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024038 AK025653 AK299312 AL133609 AL137420
RefSeq transcript (Entrez)NM_001281517 NM_001281518 NM_022778
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)CEP85
Cluster EST : UnigeneHs.109051 [ NCBI ]
CGAP (NCI)Hs.109051
Alternative Splicing GalleryENSG00000130695
Gene ExpressionCEP85 [ NCBI-GEO ]   CEP85 [ EBI - ARRAY_EXPRESS ]   CEP85 [ SEEK ]   CEP85 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64793
GTEX Portal (Tissue expression)CEP85
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2H3
Splice isoforms : SwissVarQ6P2H3
PhosPhoSitePlusQ6P2H3
Domains : Interpro (EBI)Cep85   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CEP85
DMDM Disease mutations64793
Blocks (Seattle)CEP85
SuperfamilyQ6P2H3
Human Protein AtlasENSG00000130695
Peptide AtlasQ6P2H3
HPRD07844
IPIIPI00550977   IPI00009702   IPI00847495   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2H3
IntAct (EBI)Q6P2H3
FunCoupENSG00000130695
BioGRIDCEP85
STRING (EMBL)CEP85
ZODIACCEP85
Ontologies - Pathways
QuickGOQ6P2H3
Ontology : AmiGOspindle pole  protein binding  nucleolus  cytoplasm  Golgi apparatus  centrosome  
Ontology : EGO-EBIspindle pole  protein binding  nucleolus  cytoplasm  Golgi apparatus  centrosome  
NDEx NetworkCEP85
Atlas of Cancer Signalling NetworkCEP85
Wikipedia pathwaysCEP85
Orthology - Evolution
OrthoDB64793
GeneTree (enSembl)ENSG00000130695
Phylogenetic Trees/Animal Genes : TreeFamCEP85
HOVERGENQ6P2H3
HOGENOMQ6P2H3
Homologs : HomoloGeneCEP85
Homology/Alignments : Family Browser (UCSC)CEP85
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP85
dbVarCEP85
ClinVarCEP85
1000_GenomesCEP85 
Exome Variant ServerCEP85
ExAC (Exome Aggregation Consortium)CEP85 (select the gene name)
Genetic variants : HAPMAP64793
Genomic Variants (DGV)CEP85 [DGVbeta]
DECIPHER (Syndromes)1:26560644-26605529  ENSG00000130695
CONAN: Copy Number AnalysisCEP85 
Mutations
ICGC Data PortalCEP85 
TCGA Data PortalCEP85 
Broad Tumor PortalCEP85
OASIS PortalCEP85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP85
DgiDB (Drug Gene Interaction Database)CEP85
DoCM (Curated mutations)CEP85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP85 (select a term)
intoGenCEP85
Cancer3DCEP85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEP85
Genetic Testing Registry CEP85
NextProtQ6P2H3 [Medical]
TSGene64793
GENETestsCEP85
Huge Navigator CEP85 [HugePedia]
snp3D : Map Gene to Disease64793
BioCentury BCIQCEP85
ClinGenCEP85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64793
Chemical/Pharm GKB GenePA142672180
Clinical trialCEP85
Miscellaneous
canSAR (ICR)CEP85 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP85
EVEXCEP85
GoPubMedCEP85
iHOPCEP85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:11 CET 2017

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