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CEP85L (centrosomal protein 85 like)

Identity

Alias_namesC6orf204
chromosome 6 open reading frame 204
centrosomal protein 85kDa-like
Alias_symbol (synonym)NY-BR-15
bA57K17.2
Other alias
HGNC (Hugo) CEP85L
LocusID (NCBI) 387119
Atlas_Id 52797
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 118460772 and ends at 118651857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGAP18 (6q22.33) / CEP85L (6q22.31)CEP85L (6q22.31) / CUL1 (7q36.1)CEP85L (6q22.31) / DAB2IP (9q33.2)
CEP85L (6q22.31) / EEF1A1 (6q13)CEP85L (6q22.31) / PDGFRB (5q32)CEP85L (6q22.31) / ROS1 (6q22.1)
CEP85L (6q22.31) / SCML4 (6q21)CEP85L (6q22.31) / SYTL3 (6q25.3)GAS8 (16q24.3) / CEP85L (6q22.31)
OSTM1 (6q21) / CEP85L (6q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;6)(q33;q23) CEP85L/PDGFRB


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CEP85L   21638
Cards
Entrez_Gene (NCBI)CEP85L  387119  centrosomal protein 85 like
AliasesC6orf204; NY-BR-15; bA57K17.2
GeneCards (Weizmann)CEP85L
Ensembl hg19 (Hinxton)ENSG00000111860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111860 [Gene_View]  chr6:118460772-118651857 [Contig_View]  CEP85L [Vega]
ICGC DataPortalENSG00000111860
TCGA cBioPortalCEP85L
AceView (NCBI)CEP85L
Genatlas (Paris)CEP85L
WikiGenes387119
SOURCE (Princeton)CEP85L
Genetics Home Reference (NIH)CEP85L
Genomic and cartography
GoldenPath hg38 (UCSC)CEP85L  -     chr6:118460772-118651857 -  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP85L  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblCEP85L - 6q22.31 [CytoView hg19]  CEP85L - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBICEP85L [Mapview hg19]  CEP85L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131811 AF308284 AK302591 AL133101 AY313778
RefSeq transcript (Entrez)NM_001042475 NM_001178035 NM_206921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP85L
Cluster EST : UnigeneHs.656959 [ NCBI ]
CGAP (NCI)Hs.656959
Alternative Splicing GalleryENSG00000111860
Gene ExpressionCEP85L [ NCBI-GEO ]   CEP85L [ EBI - ARRAY_EXPRESS ]   CEP85L [ SEEK ]   CEP85L [ MEM ]
Gene Expression Viewer (FireBrowse)CEP85L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387119
GTEX Portal (Tissue expression)CEP85L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZL2
Splice isoforms : SwissVarQ5SZL2
PhosPhoSitePlusQ5SZL2
Domains : Interpro (EBI)CEP85L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CEP85L
DMDM Disease mutations387119
Blocks (Seattle)CEP85L
SuperfamilyQ5SZL2
Human Protein AtlasENSG00000111860
Peptide AtlasQ5SZL2
HPRD12874
IPIIPI00150881   IPI00645760   IPI00853308   IPI00853189   IPI00477488   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZL2
IntAct (EBI)Q5SZL2
FunCoupENSG00000111860
BioGRIDCEP85L
STRING (EMBL)CEP85L
ZODIACCEP85L
Ontologies - Pathways
QuickGOQ5SZL2
Ontology : AmiGOcytoplasm  centrosome  
Ontology : EGO-EBIcytoplasm  centrosome  
NDEx NetworkCEP85L
Atlas of Cancer Signalling NetworkCEP85L
Wikipedia pathwaysCEP85L
Orthology - Evolution
OrthoDB387119
GeneTree (enSembl)ENSG00000111860
Phylogenetic Trees/Animal Genes : TreeFamCEP85L
HOVERGENQ5SZL2
HOGENOMQ5SZL2
Homologs : HomoloGeneCEP85L
Homology/Alignments : Family Browser (UCSC)CEP85L
Gene fusions - Rearrangements
Fusion : MitelmanCEP85L/ROS1 [6q22.31/6q22.1]  
Fusion : MitelmanCEP85L/SCML4 [6q22.31/6q21]  [del(6)(q21q22)]  
Fusion : MitelmanCEP85L/SYTL3 [6q22.31/6q25.3]  [t(6;6)(q22;q25)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP85L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP85L
dbVarCEP85L
ClinVarCEP85L
1000_GenomesCEP85L 
Exome Variant ServerCEP85L
ExAC (Exome Aggregation Consortium)CEP85L (select the gene name)
Genetic variants : HAPMAP387119
Genomic Variants (DGV)CEP85L [DGVbeta]
DECIPHERCEP85L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP85L 
Mutations
ICGC Data PortalCEP85L 
TCGA Data PortalCEP85L 
Broad Tumor PortalCEP85L
OASIS PortalCEP85L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP85L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEP85L
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CEP85L
DgiDB (Drug Gene Interaction Database)CEP85L
DoCM (Curated mutations)CEP85L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP85L (select a term)
intoGenCEP85L
Cancer3DCEP85L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEP85L
Genetic Testing Registry CEP85L
NextProtQ5SZL2 [Medical]
TSGene387119
GENETestsCEP85L
Target ValidationCEP85L
Huge Navigator CEP85L [HugePedia]
snp3D : Map Gene to Disease387119
BioCentury BCIQCEP85L
ClinGenCEP85L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387119
Chemical/Pharm GKB GenePA134984681
Clinical trialCEP85L
Miscellaneous
canSAR (ICR)CEP85L (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP85L
EVEXCEP85L
GoPubMedCEP85L
iHOPCEP85L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:02:02 CEST 2017

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