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CERCAM (cerebral endothelial cell adhesion molecule)

Identity

Alias_namesCEECAM1
cerebral cell adhesion molecule
Alias_symbol (synonym)GLT25D3
CerCAM
Other alias
HGNC (Hugo) CERCAM
LocusID (NCBI) 51148
Atlas_Id 61737
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 131181439 and ends at 131199630 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CERCAM (9q34.11) / CD3EAP (19q13.32)CERCAM (9q34.11) / CERCAM (9q34.11)CERCAM (9q34.11) / PPP1R9B (17q21.33)
CERCAM (9q34.11) / TNFRSF1A (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CERCAM   23723
Cards
Entrez_Gene (NCBI)CERCAM  51148  cerebral endothelial cell adhesion molecule
AliasesCEECAM1; GLT25D3
GeneCards (Weizmann)CERCAM
Ensembl hg19 (Hinxton)ENSG00000167123 [Gene_View]  chr9:131181439-131199630 [Contig_View]  CERCAM [Vega]
Ensembl hg38 (Hinxton)ENSG00000167123 [Gene_View]  chr9:131181439-131199630 [Contig_View]  CERCAM [Vega]
ICGC DataPortalENSG00000167123
TCGA cBioPortalCERCAM
AceView (NCBI)CERCAM
Genatlas (Paris)CERCAM
WikiGenes51148
SOURCE (Princeton)CERCAM
Genetics Home Reference (NIH)CERCAM
Genomic and cartography
GoldenPath hg19 (UCSC)CERCAM  -     chr9:131181439-131199630 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CERCAM  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblCERCAM - 9q34.11 [CytoView hg19]  CERCAM - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBICERCAM [Mapview hg19]  CERCAM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040935 AF177203 AF218016 AK074519 AK074523
RefSeq transcript (Entrez)NM_001286760 NM_016174
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)CERCAM
Cluster EST : UnigeneHs.495230 [ NCBI ]
CGAP (NCI)Hs.495230
Alternative Splicing GalleryENSG00000167123
Gene ExpressionCERCAM [ NCBI-GEO ]   CERCAM [ EBI - ARRAY_EXPRESS ]   CERCAM [ SEEK ]   CERCAM [ MEM ]
Gene Expression Viewer (FireBrowse)CERCAM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51148
GTEX Portal (Tissue expression)CERCAM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4B2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4B2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4B2
Splice isoforms : SwissVarQ5T4B2
PhosPhoSitePlusQ5T4B2
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Glyco_trans_25    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_25 (PF01755)   
Domain families : Pfam (NCBI)pfam01755   
Conserved Domain (NCBI)CERCAM
DMDM Disease mutations51148
Blocks (Seattle)CERCAM
SuperfamilyQ5T4B2
Human Protein AtlasENSG00000167123
Peptide AtlasQ5T4B2
HPRD16705
IPIIPI00295595   IPI00941005   IPI00642813   IPI00029994   IPI00647923   IPI00926119   IPI00924590   IPI00927917   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4B2
IntAct (EBI)Q5T4B2
FunCoupENSG00000167123
BioGRIDCERCAM
STRING (EMBL)CERCAM
ZODIACCERCAM
Ontologies - Pathways
QuickGOQ5T4B2
Ontology : AmiGOendoplasmic reticulum lumen  plasma membrane  movement of cell or subcellular component  cell adhesion  leukocyte cell-cell adhesion  
Ontology : EGO-EBIendoplasmic reticulum lumen  plasma membrane  movement of cell or subcellular component  cell adhesion  leukocyte cell-cell adhesion  
NDEx NetworkCERCAM
Atlas of Cancer Signalling NetworkCERCAM
Wikipedia pathwaysCERCAM
Orthology - Evolution
OrthoDB51148
GeneTree (enSembl)ENSG00000167123
Phylogenetic Trees/Animal Genes : TreeFamCERCAM
HOVERGENQ5T4B2
HOGENOMQ5T4B2
Homologs : HomoloGeneCERCAM
Homology/Alignments : Family Browser (UCSC)CERCAM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCERCAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CERCAM
dbVarCERCAM
ClinVarCERCAM
1000_GenomesCERCAM 
Exome Variant ServerCERCAM
ExAC (Exome Aggregation Consortium)CERCAM (select the gene name)
Genetic variants : HAPMAP51148
Genomic Variants (DGV)CERCAM [DGVbeta]
DECIPHER (Syndromes)9:131181439-131199630  ENSG00000167123
CONAN: Copy Number AnalysisCERCAM 
Mutations
ICGC Data PortalCERCAM 
TCGA Data PortalCERCAM 
Broad Tumor PortalCERCAM
OASIS PortalCERCAM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCERCAM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCERCAM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CERCAM
DgiDB (Drug Gene Interaction Database)CERCAM
DoCM (Curated mutations)CERCAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CERCAM (select a term)
intoGenCERCAM
Cancer3DCERCAM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCERCAM
Genetic Testing Registry CERCAM
NextProtQ5T4B2 [Medical]
TSGene51148
GENETestsCERCAM
Huge Navigator CERCAM [HugePedia]
snp3D : Map Gene to Disease51148
BioCentury BCIQCERCAM
ClinGenCERCAM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51148
Chemical/Pharm GKB GenePA162382177
Clinical trialCERCAM
Miscellaneous
canSAR (ICR)CERCAM (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCERCAM
EVEXCERCAM
GoPubMedCERCAM
iHOPCERCAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:12 CET 2017

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