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CERNA2 (competing endogenous lncRNA 2 for microRNA let-7b)

Identity

Alias (NCBI)HOST2
lncRNA-HOST2
HGNC (Hugo) CERNA2
HGNC Alias symbHOST2
HGNC Alias namehuman ovarian cancer specific transcript 2
LocusID (NCBI) 642934
Atlas_Id 56905
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84167228 and ends at 84172076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)CERNA2   51354
Cards
Entrez_Gene (NCBI)CERNA2    competing endogenous lncRNA 2 for microRNA let-7b
AliasesHOST2; lncRNA-HOST2
GeneCards (Weizmann)CERNA2
Ensembl hg19 (Hinxton)ENSG00000285972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000285972 [Gene_View]  ENSG00000285972 [Sequence]  chr10:84167228-84172076 [Contig_View]  CERNA2 [Vega]
ICGC DataPortalENSG00000285972
TCGA cBioPortalCERNA2
AceView (NCBI)CERNA2
Genatlas (Paris)CERNA2
SOURCE (Princeton)CERNA2
Genetics Home Reference (NIH)CERNA2
Genomic and cartography
GoldenPath hg38 (UCSC)CERNA2  -     chr10:84167228-84172076 -  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CERNA2  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathCERNA2 - 10q23.1 [CytoView hg19]  CERNA2 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000285972
Genome Data Viewer NCBICERNA2 [Mapview hg19]  
OMIM617434   
Gene and transcription
Genbank (Entrez)BC033760 BC051760
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)CERNA2
Gene ExpressionCERNA2 [ NCBI-GEO ]   CERNA2 [ EBI - ARRAY_EXPRESS ]   CERNA2 [ SEEK ]   CERNA2 [ MEM ]
Gene Expression Viewer (FireBrowse)CERNA2 [ Firebrowse - Broad ]
GenevisibleExpression of CERNA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642934
GTEX Portal (Tissue expression)CERNA2
Human Protein AtlasENSG00000285972-CERNA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CERNA2
Human Protein Atlas [tissue]ENSG00000285972-CERNA2 [tissue]
Protein Interaction databases
BioGRIDCERNA2
STRING (EMBL)CERNA2
ZODIACCERNA2
Ontologies - Pathways
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCERNA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:03:37 CEST 2021

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