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CERNA2 (competing endogenous lncRNA 2 for microRNA let-7b)

Identity

Other aliasHOST2
lncRNA-HOST2
HGNC (Hugo) CERNA2
LocusID (NCBI) 642934
Atlas_Id 56905
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84167228 and ends at 84172076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CERNA2   51354
Cards
Entrez_Gene (NCBI)CERNA2  642934  competing endogenous lncRNA 2 for microRNA let-7b
AliasesHOST2; lncRNA-HOST2
GeneCards (Weizmann)CERNA2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:84167228-84172076 [Contig_View]  CERNA2 [Vega]
TCGA cBioPortalCERNA2
AceView (NCBI)CERNA2
Genatlas (Paris)CERNA2
WikiGenes642934
SOURCE (Princeton)CERNA2
Genetics Home Reference (NIH)CERNA2
Genomic and cartography
GoldenPath hg38 (UCSC)CERNA2  -     chr10:84167228-84172076 -  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CERNA2  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblCERNA2 - 10q23.1 [CytoView hg19]  CERNA2 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBICERNA2 [Mapview hg19]  CERNA2 [Mapview hg38]
OMIM617434   
Gene and transcription
Genbank (Entrez)BC033760 BC051760
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CERNA2
Gene ExpressionCERNA2 [ NCBI-GEO ]   CERNA2 [ EBI - ARRAY_EXPRESS ]   CERNA2 [ SEEK ]   CERNA2 [ MEM ]
Gene Expression Viewer (FireBrowse)CERNA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)642934
GTEX Portal (Tissue expression)CERNA2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CERNA2
DMDM Disease mutations642934
Blocks (Seattle)CERNA2
IPIIPI00883705   
Protein Interaction databases
BioGRIDCERNA2
STRING (EMBL)CERNA2
ZODIACCERNA2
Ontologies - Pathways
Huge Navigator CERNA2 [HugePedia]
snp3D : Map Gene to Disease642934
BioCentury BCIQCERNA2
ClinGenCERNA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642934
Clinical trialCERNA2
Miscellaneous
canSAR (ICR)CERNA2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCERNA2
EVEXCERNA2
GoPubMedCERNA2
iHOPCERNA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:07:25 CET 2017

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