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CETN1 (centrin 1)

Identity

Alias_namesCETN
centrin
Alias_symbol (synonym)CEN1
Other alias
HGNC (Hugo) CETN1
LocusID (NCBI) 1068
Atlas_Id 40061
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 580343 and ends at 582020 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CETN1   1866
Cards
Entrez_Gene (NCBI)CETN1  1068  centrin 1
AliasesCEN1; CETN
GeneCards (Weizmann)CETN1
Ensembl hg19 (Hinxton)ENSG00000177143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177143 [Gene_View]  chr18:580343-582020 [Contig_View]  CETN1 [Vega]
ICGC DataPortalENSG00000177143
TCGA cBioPortalCETN1
AceView (NCBI)CETN1
Genatlas (Paris)CETN1
WikiGenes1068
SOURCE (Princeton)CETN1
Genetics Home Reference (NIH)CETN1
Genomic and cartography
GoldenPath hg38 (UCSC)CETN1  -     chr18:580343-582020 +  18p11.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CETN1  -     18p11.32   [Description]    (hg19-Feb_2009)
EnsemblCETN1 - 18p11.32 [CytoView hg19]  CETN1 - 18p11.32 [CytoView hg38]
Mapping of homologs : NCBICETN1 [Mapview hg19]  CETN1 [Mapview hg38]
OMIM603187   
Gene and transcription
Genbank (Entrez)AI198628 AK312047 BC029515 DB448454 DQ890970
RefSeq transcript (Entrez)NM_004066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CETN1
Cluster EST : UnigeneHs.122511 [ NCBI ]
CGAP (NCI)Hs.122511
Alternative Splicing GalleryENSG00000177143
Gene ExpressionCETN1 [ NCBI-GEO ]   CETN1 [ EBI - ARRAY_EXPRESS ]   CETN1 [ SEEK ]   CETN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CETN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1068
GTEX Portal (Tissue expression)CETN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12798   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12798  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12798
Splice isoforms : SwissVarQ12798
PhosPhoSitePlusQ12798
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    RNA-helicase_DEAD-box_CS   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CETN1
DMDM Disease mutations1068
Blocks (Seattle)CETN1
SuperfamilyQ12798
Human Protein AtlasENSG00000177143
Peptide AtlasQ12798
HPRD04425
IPIIPI00029225   
Protein Interaction databases
DIP (DOE-UCLA)Q12798
IntAct (EBI)Q12798
FunCoupENSG00000177143
BioGRIDCETN1
STRING (EMBL)CETN1
ZODIACCETN1
Ontologies - Pathways
QuickGOQ12798
Ontology : AmiGOspindle pole  calcium ion binding  protein binding  centrosome  centrosome  centriole  cell cycle  microtubule binding  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  heterotrimeric G-protein binding  cellular response to heat  cell division  
Ontology : EGO-EBIspindle pole  calcium ion binding  protein binding  centrosome  centrosome  centriole  cell cycle  microtubule binding  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  heterotrimeric G-protein binding  cellular response to heat  cell division  
NDEx NetworkCETN1
Atlas of Cancer Signalling NetworkCETN1
Wikipedia pathwaysCETN1
Orthology - Evolution
OrthoDB1068
GeneTree (enSembl)ENSG00000177143
Phylogenetic Trees/Animal Genes : TreeFamCETN1
HOVERGENQ12798
HOGENOMQ12798
Homologs : HomoloGeneCETN1
Homology/Alignments : Family Browser (UCSC)CETN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCETN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CETN1
dbVarCETN1
ClinVarCETN1
1000_GenomesCETN1 
Exome Variant ServerCETN1
ExAC (Exome Aggregation Consortium)CETN1 (select the gene name)
Genetic variants : HAPMAP1068
Genomic Variants (DGV)CETN1 [DGVbeta]
DECIPHERCETN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCETN1 
Mutations
ICGC Data PortalCETN1 
TCGA Data PortalCETN1 
Broad Tumor PortalCETN1
OASIS PortalCETN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCETN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCETN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CETN1
DgiDB (Drug Gene Interaction Database)CETN1
DoCM (Curated mutations)CETN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CETN1 (select a term)
intoGenCETN1
Cancer3DCETN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603187   
Orphanet
MedgenCETN1
Genetic Testing Registry CETN1
NextProtQ12798 [Medical]
TSGene1068
GENETestsCETN1
Target ValidationCETN1
Huge Navigator CETN1 [HugePedia]
snp3D : Map Gene to Disease1068
BioCentury BCIQCETN1
ClinGenCETN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1068
Chemical/Pharm GKB GenePA26419
Clinical trialCETN1
Miscellaneous
canSAR (ICR)CETN1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCETN1
EVEXCETN1
GoPubMedCETN1
iHOPCETN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:06 CEST 2017

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