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CETN2 (centrin 2)

Identity

Alias_namesCALT
centrin
Alias_symbol (synonym)CEN2
Other alias
HGNC (Hugo) CETN2
LocusID (NCBI) 1069
Atlas_Id 40062
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151995871 and ends at 151999301 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CETN2   1867
Cards
Entrez_Gene (NCBI)CETN2  1069  centrin 2
AliasesCALT; CEN2
GeneCards (Weizmann)CETN2
Ensembl hg19 (Hinxton)ENSG00000147400 [Gene_View]  chrX:151995871-151999301 [Contig_View]  CETN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147400 [Gene_View]  chrX:151995871-151999301 [Contig_View]  CETN2 [Vega]
ICGC DataPortalENSG00000147400
TCGA cBioPortalCETN2
AceView (NCBI)CETN2
Genatlas (Paris)CETN2
WikiGenes1069
SOURCE (Princeton)CETN2
Genetics Home Reference (NIH)CETN2
Genomic and cartography
GoldenPath hg19 (UCSC)CETN2  -     chrX:151995871-151999301 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CETN2  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblCETN2 - Xq28 [CytoView hg19]  CETN2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICETN2 [Mapview hg19]  CETN2 [Mapview hg38]
OMIM300006   
Gene and transcription
Genbank (Entrez)AK311940 AM393039 BC005334 BC013873 BT007256
RefSeq transcript (Entrez)NM_004344
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_009163 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)CETN2
Cluster EST : UnigeneHs.82794 [ NCBI ]
CGAP (NCI)Hs.82794
Alternative Splicing GalleryENSG00000147400
Gene ExpressionCETN2 [ NCBI-GEO ]   CETN2 [ EBI - ARRAY_EXPRESS ]   CETN2 [ SEEK ]   CETN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CETN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1069
GTEX Portal (Tissue expression)CETN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41208   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP41208  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP41208
Splice isoforms : SwissVarP41208
PhosPhoSitePlusP41208
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)CETN2    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    RNA-helicase_DEAD-box_CS   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CETN2
DMDM Disease mutations1069
Blocks (Seattle)CETN2
PDB (SRS)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
PDB (PDBSum)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
PDB (IMB)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
PDB (RSDB)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
Structural Biology KnowledgeBase1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
SCOP (Structural Classification of Proteins)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
CATH (Classification of proteins structures)1M39    1ZMZ    2A4J    2GGM    2K2I    2OBH   
SuperfamilyP41208
Human Protein AtlasENSG00000147400
Peptide AtlasP41208
HPRD02051
IPIIPI00215928   
Protein Interaction databases
DIP (DOE-UCLA)P41208
IntAct (EBI)P41208
FunCoupENSG00000147400
BioGRIDCETN2
STRING (EMBL)CETN2
ZODIACCETN2
Ontologies - Pathways
QuickGOP41208
Ontology : AmiGOG2/M transition of mitotic cell cycle  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA duplex unwinding  calcium ion binding  protein binding  intracellular  nucleoplasm  centrosome  centrosome  centriole  cytosol  nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  mitotic nuclear division  centriole replication  spermatogenesis  microtubule binding  protein sumoylation  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  regulation of cytokinesis  heterotrimeric G-protein binding  ciliary basal body  cell division  global genome nucleotide-excision repair  XPC complex  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  nucleotide-excision repair, DNA damage recognition  nucleotide-excision repair, DNA duplex unwinding  calcium ion binding  protein binding  intracellular  nucleoplasm  centrosome  centrosome  centriole  cytosol  nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  mitotic nuclear division  centriole replication  spermatogenesis  microtubule binding  protein sumoylation  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  regulation of cytokinesis  heterotrimeric G-protein binding  ciliary basal body  cell division  global genome nucleotide-excision repair  XPC complex  
Pathways : KEGGNucleotide excision repair   
NDEx NetworkCETN2
Atlas of Cancer Signalling NetworkCETN2
Wikipedia pathwaysCETN2
Orthology - Evolution
OrthoDB1069
GeneTree (enSembl)ENSG00000147400
Phylogenetic Trees/Animal Genes : TreeFamCETN2
HOVERGENP41208
HOGENOMP41208
Homologs : HomoloGeneCETN2
Homology/Alignments : Family Browser (UCSC)CETN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCETN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CETN2
dbVarCETN2
ClinVarCETN2
1000_GenomesCETN2 
Exome Variant ServerCETN2
ExAC (Exome Aggregation Consortium)CETN2 (select the gene name)
Genetic variants : HAPMAP1069
Genomic Variants (DGV)CETN2 [DGVbeta]
DECIPHER (Syndromes)X:151995871-151999301  ENSG00000147400
CONAN: Copy Number AnalysisCETN2 
Mutations
ICGC Data PortalCETN2 
TCGA Data PortalCETN2 
Broad Tumor PortalCETN2
OASIS PortalCETN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCETN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCETN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CETN2
DgiDB (Drug Gene Interaction Database)CETN2
DoCM (Curated mutations)CETN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CETN2 (select a term)
intoGenCETN2
Cancer3DCETN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300006   
Orphanet
MedgenCETN2
Genetic Testing Registry CETN2
NextProtP41208 [Medical]
TSGene1069
GENETestsCETN2
Huge Navigator CETN2 [HugePedia]
snp3D : Map Gene to Disease1069
BioCentury BCIQCETN2
ClinGenCETN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1069
Chemical/Pharm GKB GenePA26420
Clinical trialCETN2
Miscellaneous
canSAR (ICR)CETN2 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCETN2
EVEXCETN2
GoPubMedCETN2
iHOPCETN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:17 CEST 2017

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