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CETN3 (centrin 3)

Identity

Alias_namescentrin, EF-hand protein, 3 (CDC31 yeast homolog)
centrin, EF-hand protein, 3
Alias_symbol (synonym)CEN3
Other aliasCDC31
HGNC (Hugo) CETN3
LocusID (NCBI) 1070
Atlas_Id 57391
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 90393335 and ends at 90409786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SKIV2L2 (5q11.2) / CETN3 (5q14.3)TMEM161B (5q14.3) / CETN3 (5q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CETN3   1868
Cards
Entrez_Gene (NCBI)CETN3  1070  centrin 3
AliasesCDC31; CEN3
GeneCards (Weizmann)CETN3
Ensembl hg19 (Hinxton)ENSG00000153140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153140 [Gene_View]  ENSG00000153140 [Sequence]  chr5:90393335-90409786 [Contig_View]  CETN3 [Vega]
ICGC DataPortalENSG00000153140
TCGA cBioPortalCETN3
AceView (NCBI)CETN3
Genatlas (Paris)CETN3
WikiGenes1070
SOURCE (Princeton)CETN3
Genetics Home Reference (NIH)CETN3
Genomic and cartography
GoldenPath hg38 (UCSC)CETN3  -     chr5:90393335-90409786 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CETN3  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathCETN3 - 5q14.3 [CytoView hg19]  CETN3 - 5q14.3 [CytoView hg38]
ImmunoBaseENSG00000153140
Mapping of homologs : NCBICETN3 [Mapview hg19]  CETN3 [Mapview hg38]
OMIM602907   
Gene and transcription
Genbank (Entrez)BC005383 BC093793 BC112040 BM553126 BQ000279
RefSeq transcript (Entrez)NM_001297765 NM_001297768 NM_004365
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CETN3
Cluster EST : UnigeneHs.591767 [ NCBI ]
CGAP (NCI)Hs.591767
Alternative Splicing GalleryENSG00000153140
Gene ExpressionCETN3 [ NCBI-GEO ]   CETN3 [ EBI - ARRAY_EXPRESS ]   CETN3 [ SEEK ]   CETN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CETN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1070
GTEX Portal (Tissue expression)CETN3
Human Protein AtlasENSG00000153140-CETN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15182   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15182  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15182
Splice isoforms : SwissVarO15182
PhosPhoSitePlusO15182
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CETN3
DMDM Disease mutations1070
Blocks (Seattle)CETN3
SuperfamilyO15182
Human Protein Atlas [tissue]ENSG00000153140-CETN3 [tissue]
Peptide AtlasO15182
IPIIPI00005210   IPI00974470   IPI00974347   IPI00981237   IPI00984190   IPI00974410   
Protein Interaction databases
DIP (DOE-UCLA)O15182
IntAct (EBI)O15182
FunCoupENSG00000153140
BioGRIDCETN3
STRING (EMBL)CETN3
ZODIACCETN3
Ontologies - Pathways
QuickGOO15182
Ontology : AmiGOcalcium ion binding  calcium ion binding  protein binding  nucleolus  centrosome  centriole  microtubule organizing center  centrosome cycle  microtubule binding  protein transport  spindle pole body duplication  nuclear pore nuclear basket  mRNA transport  cell division  transcription export complex 2  
Ontology : EGO-EBIcalcium ion binding  calcium ion binding  protein binding  nucleolus  centrosome  centriole  microtubule organizing center  centrosome cycle  microtubule binding  protein transport  spindle pole body duplication  nuclear pore nuclear basket  mRNA transport  cell division  transcription export complex 2  
NDEx NetworkCETN3
Atlas of Cancer Signalling NetworkCETN3
Wikipedia pathwaysCETN3
Orthology - Evolution
OrthoDB1070
GeneTree (enSembl)ENSG00000153140
Phylogenetic Trees/Animal Genes : TreeFamCETN3
HOGENOMO15182
Homologs : HomoloGeneCETN3
Homology/Alignments : Family Browser (UCSC)CETN3
Gene fusions - Rearrangements
Fusion : QuiverCETN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCETN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CETN3
dbVarCETN3
ClinVarCETN3
1000_GenomesCETN3 
Exome Variant ServerCETN3
ExAC (Exome Aggregation Consortium)ENSG00000153140
GNOMAD BrowserENSG00000153140
Varsome BrowserCETN3
Genetic variants : HAPMAP1070
Genomic Variants (DGV)CETN3 [DGVbeta]
DECIPHERCETN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCETN3 
Mutations
ICGC Data PortalCETN3 
TCGA Data PortalCETN3 
Broad Tumor PortalCETN3
OASIS PortalCETN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCETN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCETN3
Mutations and Diseases : HGMDCETN3
BioMutasearch CETN3
DgiDB (Drug Gene Interaction Database)CETN3
DoCM (Curated mutations)CETN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CETN3 (select a term)
intoGenCETN3
Cancer3DCETN3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602907   
Orphanet
DisGeNETCETN3
MedgenCETN3
Genetic Testing Registry CETN3
NextProtO15182 [Medical]
TSGene1070
GENETestsCETN3
Target ValidationCETN3
Huge Navigator CETN3 [HugePedia]
snp3D : Map Gene to Disease1070
BioCentury BCIQCETN3
ClinGenCETN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1070
Chemical/Pharm GKB GenePA26421
Clinical trialCETN3
Miscellaneous
canSAR (ICR)CETN3 (select the gene name)
DataMed IndexCETN3
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCETN3
EVEXCETN3
GoPubMedCETN3
iHOPCETN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:37:00 CET 2019

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