Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CETP (cholesteryl ester transfer protein)

Identity

Alias (NCBI)BPIFF
HDLCQ10
HGNC (Hugo) CETP
HGNC Alias symbBPIFF
HGNC Alias nameBPI fold containing family F
HGNC Previous namecholesteryl ester transfer protein, plasma
LocusID (NCBI) 1071
Atlas_Id 57338
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56961950 and ends at 56983845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNOT1 (16q21) / CETP (16q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CETP   1869
Cards
Entrez_Gene (NCBI)CETP  1071  cholesteryl ester transfer protein
AliasesBPIFF; HDLCQ10
GeneCards (Weizmann)CETP
Ensembl hg19 (Hinxton)ENSG00000087237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087237 [Gene_View]  ENSG00000087237 [Sequence]  chr16:56961950-56983845 [Contig_View]  CETP [Vega]
ICGC DataPortalENSG00000087237
TCGA cBioPortalCETP
AceView (NCBI)CETP
Genatlas (Paris)CETP
WikiGenes1071
SOURCE (Princeton)CETP
Genetics Home Reference (NIH)CETP
Genomic and cartography
GoldenPath hg38 (UCSC)CETP  -     chr16:56961950-56983845 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CETP  -     16q13   [Description]    (hg19-Feb_2009)
GoldenPathCETP - 16q13 [CytoView hg19]  CETP - 16q13 [CytoView hg38]
ImmunoBaseENSG00000087237
genome Data Viewer NCBICETP [Mapview hg19]  
OMIM118470   143470   
Gene and transcription
Genbank (Entrez)AA999853 AK291586 AK297699 BC025739 BT020064
RefSeq transcript (Entrez)NM_000078 NM_001286085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CETP
Alternative Splicing GalleryENSG00000087237
Gene ExpressionCETP [ NCBI-GEO ]   CETP [ EBI - ARRAY_EXPRESS ]   CETP [ SEEK ]   CETP [ MEM ]
Gene Expression Viewer (FireBrowse)CETP [ Firebrowse - Broad ]
GenevisibleExpression of CETP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1071
GTEX Portal (Tissue expression)CETP
Human Protein AtlasENSG00000087237-CETP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11597   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11597  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11597
Splice isoforms : SwissVarP11597
PhosPhoSitePlusP11597
Domaine pattern : Prosite (Expaxy)LBP_BPI_CETP (PS00400)   
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Cholesteryl_ester_transfer    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_CS    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)CETP
DMDM Disease mutations1071
Blocks (Seattle)CETP
PDB (RSDB)2OBD    4EWS    4F2A   
PDB Europe2OBD    4EWS    4F2A   
PDB (PDBSum)2OBD    4EWS    4F2A   
PDB (IMB)2OBD    4EWS    4F2A   
Structural Biology KnowledgeBase2OBD    4EWS    4F2A   
SCOP (Structural Classification of Proteins)2OBD    4EWS    4F2A   
CATH (Classification of proteins structures)2OBD    4EWS    4F2A   
SuperfamilyP11597
Human Protein Atlas [tissue]ENSG00000087237-CETP [tissue]
Peptide AtlasP11597
IPIIPI00006173   IPI00641481   
Protein Interaction databases
DIP (DOE-UCLA)P11597
IntAct (EBI)P11597
FunCoupENSG00000087237
BioGRIDCETP
STRING (EMBL)CETP
ZODIACCETP
Ontologies - Pathways
QuickGOP11597
Ontology : AmiGOphospholipid transporter activity  phospholipid transporter activity  extracellular region  extracellular space  triglyceride metabolic process  triglyceride metabolic process  lipid transport  cholesterol metabolic process  cholesterol metabolic process  cholesterol metabolic process  lipid binding  negative regulation of macrophage derived foam cell differentiation  regulation of cholesterol efflux  cholesterol binding  cholesterol binding  phospholipid transport  triglyceride binding  triglyceride binding  cholesterol transport  phosphatidylcholine binding  phosphatidylcholine binding  vesicle  positive regulation of cholesterol transport  triglyceride transport  triglyceride transport  high-density lipoprotein particle  high-density lipoprotein particle  very-low-density lipoprotein particle remodeling  very-low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  cholesterol homeostasis  cholesterol homeostasis  reverse cholesterol transport  phosphatidylcholine metabolic process  phosphatidylcholine metabolic process  lipid homeostasis  phospholipid homeostasis  phospholipid homeostasis  extracellular exosome  triglyceride homeostasis  triglyceride homeostasis  intermembrane lipid transfer  intermembrane cholesterol transfer activity  positive regulation of phospholipid transport  
Ontology : EGO-EBIphospholipid transporter activity  phospholipid transporter activity  extracellular region  extracellular space  triglyceride metabolic process  triglyceride metabolic process  lipid transport  cholesterol metabolic process  cholesterol metabolic process  cholesterol metabolic process  lipid binding  negative regulation of macrophage derived foam cell differentiation  regulation of cholesterol efflux  cholesterol binding  cholesterol binding  phospholipid transport  triglyceride binding  triglyceride binding  cholesterol transport  phosphatidylcholine binding  phosphatidylcholine binding  vesicle  positive regulation of cholesterol transport  triglyceride transport  triglyceride transport  high-density lipoprotein particle  high-density lipoprotein particle  very-low-density lipoprotein particle remodeling  very-low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  low-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  high-density lipoprotein particle remodeling  cholesterol homeostasis  cholesterol homeostasis  reverse cholesterol transport  phosphatidylcholine metabolic process  phosphatidylcholine metabolic process  lipid homeostasis  phospholipid homeostasis  phospholipid homeostasis  extracellular exosome  triglyceride homeostasis  triglyceride homeostasis  intermembrane lipid transfer  intermembrane cholesterol transfer activity  positive regulation of phospholipid transport  
NDEx NetworkCETP
Atlas of Cancer Signalling NetworkCETP
Wikipedia pathwaysCETP
Orthology - Evolution
OrthoDB1071
GeneTree (enSembl)ENSG00000087237
Phylogenetic Trees/Animal Genes : TreeFamCETP
HOGENOMP11597
Homologs : HomoloGeneCETP
Homology/Alignments : Family Browser (UCSC)CETP
Gene fusions - Rearrangements
Fusion : QuiverCETP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCETP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CETP
dbVarCETP
ClinVarCETP
1000_GenomesCETP 
Exome Variant ServerCETP
GNOMAD BrowserENSG00000087237
Varsome BrowserCETP
Genetic variants : HAPMAP1071
Genomic Variants (DGV)CETP [DGVbeta]
DECIPHERCETP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCETP 
Mutations
ICGC Data PortalCETP 
TCGA Data PortalCETP 
Broad Tumor PortalCETP
OASIS PortalCETP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCETP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCETP
Mutations and Diseases : HGMDCETP
BioMutasearch CETP
DgiDB (Drug Gene Interaction Database)CETP
DoCM (Curated mutations)CETP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CETP (select a term)
intoGenCETP
Cancer3DCETP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118470    143470   
Orphanet
DisGeNETCETP
MedgenCETP
Genetic Testing Registry CETP
NextProtP11597 [Medical]
TSGene1071
GENETestsCETP
Target ValidationCETP
Huge Navigator CETP [HugePedia]
snp3D : Map Gene to Disease1071
BioCentury BCIQCETP
ClinGenCETP
Clinical trials, drugs, therapy
Protein Interactions : CTD1071
Pharm GKB GenePA108
Clinical trialCETP
Miscellaneous
canSAR (ICR)CETP (select the gene name)
HarmonizomeCETP
DataMed IndexCETP
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCETP
EVEXCETP
GoPubMedCETP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:07:29 CEST 2020

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