Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CFAP100 (cilia and flagella associated protein 100)

Identity

Alias_namesCCDC37
coiled-coil domain containing 37
Alias_symbol (synonym)FLJ40083
MIA1
Other alias
HGNC (Hugo) CFAP100
LocusID (NCBI) 348807
Atlas_Id 52716
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126113782 and ends at 126155398 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CFAP100   26842
Cards
Entrez_Gene (NCBI)CFAP100  348807  cilia and flagella associated protein 100
AliasesCCDC37; MIA1
GeneCards (Weizmann)CFAP100
Ensembl hg19 (Hinxton)ENSG00000163885 [Gene_View]  chr3:126113782-126155398 [Contig_View]  CFAP100 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163885 [Gene_View]  chr3:126113782-126155398 [Contig_View]  CFAP100 [Vega]
ICGC DataPortalENSG00000163885
TCGA cBioPortalCFAP100
AceView (NCBI)CFAP100
Genatlas (Paris)CFAP100
WikiGenes348807
SOURCE (Princeton)CFAP100
Genetics Home Reference (NIH)CFAP100
Genomic and cartography
GoldenPath hg19 (UCSC)CFAP100  -     chr3:126113782-126155398 +  3q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CFAP100  -     3q21.3   [Description]    (hg38-Dec_2013)
EnsemblCFAP100 - 3q21.3 [CytoView hg19]  CFAP100 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBICFAP100 [Mapview hg19]  CFAP100 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097402 BC101366 BC101367 BC101368 BC101369
RefSeq transcript (Entrez)NM_182628
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CFAP100
Cluster EST : UnigeneHs.591305 [ NCBI ]
CGAP (NCI)Hs.591305
Alternative Splicing GalleryENSG00000163885
Gene ExpressionCFAP100 [ NCBI-GEO ]   CFAP100 [ EBI - ARRAY_EXPRESS ]   CFAP100 [ SEEK ]   CFAP100 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP100 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348807
GTEX Portal (Tissue expression)CFAP100
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ494V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ494V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ494V2
Splice isoforms : SwissVarQ494V2
PhosPhoSitePlusQ494V2
Domains : Interpro (EBI)DUF4200   
Domain families : Pfam (Sanger)DUF4200 (PF13863)   
Domain families : Pfam (NCBI)pfam13863   
Conserved Domain (NCBI)CFAP100
DMDM Disease mutations348807
Blocks (Seattle)CFAP100
SuperfamilyQ494V2
Human Protein AtlasENSG00000163885
Peptide AtlasQ494V2
HPRD08805
IPIIPI00749275   IPI00297937   IPI00789643   
Protein Interaction databases
DIP (DOE-UCLA)Q494V2
IntAct (EBI)Q494V2
FunCoupENSG00000163885
BioGRIDCFAP100
STRING (EMBL)CFAP100
ZODIACCFAP100
Ontologies - Pathways
QuickGOQ494V2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP100
Atlas of Cancer Signalling NetworkCFAP100
Wikipedia pathwaysCFAP100
Orthology - Evolution
OrthoDB348807
GeneTree (enSembl)ENSG00000163885
Phylogenetic Trees/Animal Genes : TreeFamCFAP100
HOVERGENQ494V2
HOGENOMQ494V2
Homologs : HomoloGeneCFAP100
Homology/Alignments : Family Browser (UCSC)CFAP100
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP100 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP100
dbVarCFAP100
ClinVarCFAP100
1000_GenomesCFAP100 
Exome Variant ServerCFAP100
ExAC (Exome Aggregation Consortium)CFAP100 (select the gene name)
Genetic variants : HAPMAP348807
Genomic Variants (DGV)CFAP100 [DGVbeta]
DECIPHER (Syndromes)3:126113782-126155398  ENSG00000163885
CONAN: Copy Number AnalysisCFAP100 
Mutations
ICGC Data PortalCFAP100 
TCGA Data PortalCFAP100 
Broad Tumor PortalCFAP100
OASIS PortalCFAP100 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP100
BioMutasearch CFAP100
DgiDB (Drug Gene Interaction Database)CFAP100
DoCM (Curated mutations)CFAP100 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP100 (select a term)
intoGenCFAP100
Cancer3DCFAP100(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP100
Genetic Testing Registry CFAP100
NextProtQ494V2 [Medical]
TSGene348807
GENETestsCFAP100
Huge Navigator CFAP100 [HugePedia]
snp3D : Map Gene to Disease348807
BioCentury BCIQCFAP100
ClinGenCFAP100
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348807
Chemical/Pharm GKB GenePA142672192
Clinical trialCFAP100
Miscellaneous
canSAR (ICR)CFAP100 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP100
EVEXCFAP100
GoPubMedCFAP100
iHOPCFAP100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:08 CET 2017

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