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CFAP157 (cilia and flagella associated protein 157)

Identity

Alias_namesC9orf117
chromosome 9 open reading frame 117
Other alias
HGNC (Hugo) CFAP157
LocusID (NCBI) 286207
Atlas_Id 77820
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127706992 and ends at 127714024 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP157   27843
Cards
Entrez_Gene (NCBI)CFAP157  286207  cilia and flagella associated protein 157
AliasesC9orf117
GeneCards (Weizmann)CFAP157
Ensembl hg19 (Hinxton)ENSG00000160401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160401 [Gene_View]  chr9:127706992-127714024 [Contig_View]  CFAP157 [Vega]
ICGC DataPortalENSG00000160401
TCGA cBioPortalCFAP157
AceView (NCBI)CFAP157
Genatlas (Paris)CFAP157
WikiGenes286207
SOURCE (Princeton)CFAP157
Genetics Home Reference (NIH)CFAP157
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP157  -     chr9:127706992-127714024 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP157  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblCFAP157 - 9q34.11 [CytoView hg19]  CFAP157 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBICFAP157 [Mapview hg19]  CFAP157 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094948 AK126437 AL833241 BC125172 BC133027
RefSeq transcript (Entrez)NM_001012502
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP157
Cluster EST : UnigeneHs.652519 [ NCBI ]
CGAP (NCI)Hs.652519
Alternative Splicing GalleryENSG00000160401
Gene ExpressionCFAP157 [ NCBI-GEO ]   CFAP157 [ EBI - ARRAY_EXPRESS ]   CFAP157 [ SEEK ]   CFAP157 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP157 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286207
GTEX Portal (Tissue expression)CFAP157
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JU67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JU67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JU67
Splice isoforms : SwissVarQ5JU67
PhosPhoSitePlusQ5JU67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP157
DMDM Disease mutations286207
Blocks (Seattle)CFAP157
SuperfamilyQ5JU67
Human Protein AtlasENSG00000160401
Peptide AtlasQ5JU67
HPRD16673
IPIIPI00175472   IPI00847343   IPI00829928   
Protein Interaction databases
DIP (DOE-UCLA)Q5JU67
IntAct (EBI)Q5JU67
FunCoupENSG00000160401
BioGRIDCFAP157
STRING (EMBL)CFAP157
ZODIACCFAP157
Ontologies - Pathways
QuickGOQ5JU67
Ontology : AmiGOcytosol  plasma membrane  cilium  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcytosol  plasma membrane  cilium  intracellular membrane-bounded organelle  
NDEx NetworkCFAP157
Atlas of Cancer Signalling NetworkCFAP157
Wikipedia pathwaysCFAP157
Orthology - Evolution
OrthoDB286207
GeneTree (enSembl)ENSG00000160401
Phylogenetic Trees/Animal Genes : TreeFamCFAP157
HOVERGENQ5JU67
HOGENOMQ5JU67
Homologs : HomoloGeneCFAP157
Homology/Alignments : Family Browser (UCSC)CFAP157
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP157 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP157
dbVarCFAP157
ClinVarCFAP157
1000_GenomesCFAP157 
Exome Variant ServerCFAP157
ExAC (Exome Aggregation Consortium)CFAP157 (select the gene name)
Genetic variants : HAPMAP286207
Genomic Variants (DGV)CFAP157 [DGVbeta]
DECIPHERCFAP157 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP157 
Mutations
ICGC Data PortalCFAP157 
TCGA Data PortalCFAP157 
Broad Tumor PortalCFAP157
OASIS PortalCFAP157 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP157
BioMutasearch CFAP157
DgiDB (Drug Gene Interaction Database)CFAP157
DoCM (Curated mutations)CFAP157 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP157 (select a term)
intoGenCFAP157
Cancer3DCFAP157(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP157
Genetic Testing Registry CFAP157
NextProtQ5JU67 [Medical]
TSGene286207
GENETestsCFAP157
Target ValidationCFAP157
Huge Navigator CFAP157 [HugePedia]
snp3D : Map Gene to Disease286207
BioCentury BCIQCFAP157
ClinGenCFAP157
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286207
Chemical/Pharm GKB GenePA134929148
Clinical trialCFAP157
Miscellaneous
canSAR (ICR)CFAP157 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP157
EVEXCFAP157
GoPubMedCFAP157
iHOPCFAP157
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:39 CEST 2017

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