Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CFAP161 (cilia and flagella associated protein 161)

Identity

Alias_namesC15orf26
chromosome 15 open reading frame 26
Alias_symbol (synonym)FLJ38615
Other alias
HGNC (Hugo) CFAP161
LocusID (NCBI) 161502
Atlas_Id 77821
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 81134303 and ends at 81149175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP161   26782
Cards
Entrez_Gene (NCBI)CFAP161  161502  cilia and flagella associated protein 161
AliasesC15orf26
GeneCards (Weizmann)CFAP161
Ensembl hg19 (Hinxton)ENSG00000156206 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156206 [Gene_View]  chr15:81134303-81149175 [Contig_View]  CFAP161 [Vega]
ICGC DataPortalENSG00000156206
TCGA cBioPortalCFAP161
AceView (NCBI)CFAP161
Genatlas (Paris)CFAP161
WikiGenes161502
SOURCE (Princeton)CFAP161
Genetics Home Reference (NIH)CFAP161
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP161  -     chr15:81134303-81149175 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP161  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblCFAP161 - 15q25.1 [CytoView hg19]  CFAP161 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBICFAP161 [Mapview hg19]  CFAP161 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095934 AK302120 AK307565 BC062471
RefSeq transcript (Entrez)NM_173528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP161
Cluster EST : UnigeneHs.130979 [ NCBI ]
CGAP (NCI)Hs.130979
Alternative Splicing GalleryENSG00000156206
Gene ExpressionCFAP161 [ NCBI-GEO ]   CFAP161 [ EBI - ARRAY_EXPRESS ]   CFAP161 [ SEEK ]   CFAP161 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP161 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161502
GTEX Portal (Tissue expression)CFAP161
Human Protein AtlasENSG00000156206-CFAP161 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P656   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P656  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P656
Splice isoforms : SwissVarQ6P656
PhosPhoSitePlusQ6P656
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP161
DMDM Disease mutations161502
Blocks (Seattle)CFAP161
SuperfamilyQ6P656
Human Protein Atlas [tissue]ENSG00000156206-CFAP161 [tissue]
Peptide AtlasQ6P656
HPRD08243
IPIIPI00760712   IPI00441064   
Protein Interaction databases
DIP (DOE-UCLA)Q6P656
IntAct (EBI)Q6P656
FunCoupENSG00000156206
BioGRIDCFAP161
STRING (EMBL)CFAP161
ZODIACCFAP161
Ontologies - Pathways
QuickGOQ6P656
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCFAP161
Atlas of Cancer Signalling NetworkCFAP161
Wikipedia pathwaysCFAP161
Orthology - Evolution
OrthoDB161502
GeneTree (enSembl)ENSG00000156206
Phylogenetic Trees/Animal Genes : TreeFamCFAP161
HOVERGENQ6P656
HOGENOMQ6P656
Homologs : HomoloGeneCFAP161
Homology/Alignments : Family Browser (UCSC)CFAP161
Gene fusions - Rearrangements
Tumor Fusion PortalCFAP161
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP161 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP161
dbVarCFAP161
ClinVarCFAP161
1000_GenomesCFAP161 
Exome Variant ServerCFAP161
ExAC (Exome Aggregation Consortium)ENSG00000156206
GNOMAD BrowserENSG00000156206
Genetic variants : HAPMAP161502
Genomic Variants (DGV)CFAP161 [DGVbeta]
DECIPHERCFAP161 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP161 
Mutations
ICGC Data PortalCFAP161 
TCGA Data PortalCFAP161 
Broad Tumor PortalCFAP161
OASIS PortalCFAP161 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP161
BioMutasearch CFAP161
DgiDB (Drug Gene Interaction Database)CFAP161
DoCM (Curated mutations)CFAP161 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP161 (select a term)
intoGenCFAP161
Cancer3DCFAP161(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCFAP161
MedgenCFAP161
Genetic Testing Registry CFAP161
NextProtQ6P656 [Medical]
TSGene161502
GENETestsCFAP161
Target ValidationCFAP161
Huge Navigator CFAP161 [HugePedia]
snp3D : Map Gene to Disease161502
BioCentury BCIQCFAP161
ClinGenCFAP161
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161502
Chemical/Pharm GKB GenePA134908662
Clinical trialCFAP161
Miscellaneous
canSAR (ICR)CFAP161 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP161
EVEXCFAP161
GoPubMedCFAP161
iHOPCFAP161
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:23:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.