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CFAP20 (cilia and flagella associated protein 20)

Identity

Alias_namesC16orf80
chromosome 16 open reading frame 80
Alias_symbol (synonym)GTL3
fSAP23
Other aliasEVORF
HGNC (Hugo) CFAP20
LocusID (NCBI) 29105
Atlas_Id 61752
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58147497 and ends at 58163296 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VAMP2 (17p13.1) / CFAP20 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP20   29523
Cards
Entrez_Gene (NCBI)CFAP20  29105  cilia and flagella associated protein 20
AliasesC16orf80; EVORF; GTL3; fSAP23
GeneCards (Weizmann)CFAP20
Ensembl hg19 (Hinxton)ENSG00000070761 [Gene_View]  chr16:58147497-58163296 [Contig_View]  CFAP20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000070761 [Gene_View]  chr16:58147497-58163296 [Contig_View]  CFAP20 [Vega]
ICGC DataPortalENSG00000070761
TCGA cBioPortalCFAP20
AceView (NCBI)CFAP20
Genatlas (Paris)CFAP20
WikiGenes29105
SOURCE (Princeton)CFAP20
Genetics Home Reference (NIH)CFAP20
Genomic and cartography
GoldenPath hg19 (UCSC)CFAP20  -     chr16:58147497-58163296 -  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CFAP20  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblCFAP20 - 16q21 [CytoView hg19]  CFAP20 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICFAP20 [Mapview hg19]  CFAP20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF087845 AF093680 AK027099 AK297819 AV751497
RefSeq transcript (Entrez)NM_013242
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CFAP20
Cluster EST : UnigeneHs.532755 [ NCBI ]
CGAP (NCI)Hs.532755
Alternative Splicing GalleryENSG00000070761
Gene ExpressionCFAP20 [ NCBI-GEO ]   CFAP20 [ EBI - ARRAY_EXPRESS ]   CFAP20 [ SEEK ]   CFAP20 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29105
GTEX Portal (Tissue expression)CFAP20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6A4
Splice isoforms : SwissVarQ9Y6A4
PhosPhoSitePlusQ9Y6A4
Domains : Interpro (EBI)CFA20/WDR90/C3orf67   
Domain families : Pfam (Sanger)DUF667 (PF05018)   
Domain families : Pfam (NCBI)pfam05018   
Conserved Domain (NCBI)CFAP20
DMDM Disease mutations29105
Blocks (Seattle)CFAP20
SuperfamilyQ9Y6A4
Human Protein AtlasENSG00000070761
Peptide AtlasQ9Y6A4
HPRD13616
IPIIPI00001655   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6A4
IntAct (EBI)Q9Y6A4
FunCoupENSG00000070761
BioGRIDCFAP20
STRING (EMBL)CFAP20
ZODIACCFAP20
Ontologies - Pathways
QuickGOQ9Y6A4
Ontology : AmiGOnucleus  centriole  microtubule  cilium  multicellular organismal development  protein polyglutamylation  ciliary basal body  poly(A) RNA binding  cilium morphogenesis  regulation of cilium beat frequency involved in ciliary motility  extracellular exosome  positive regulation of cell motility  positive regulation of feeding behavior  
Ontology : EGO-EBInucleus  centriole  microtubule  cilium  multicellular organismal development  protein polyglutamylation  ciliary basal body  poly(A) RNA binding  cilium morphogenesis  regulation of cilium beat frequency involved in ciliary motility  extracellular exosome  positive regulation of cell motility  positive regulation of feeding behavior  
NDEx NetworkCFAP20
Atlas of Cancer Signalling NetworkCFAP20
Wikipedia pathwaysCFAP20
Orthology - Evolution
OrthoDB29105
GeneTree (enSembl)ENSG00000070761
Phylogenetic Trees/Animal Genes : TreeFamCFAP20
HOVERGENQ9Y6A4
HOGENOMQ9Y6A4
Homologs : HomoloGeneCFAP20
Homology/Alignments : Family Browser (UCSC)CFAP20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP20
dbVarCFAP20
ClinVarCFAP20
1000_GenomesCFAP20 
Exome Variant ServerCFAP20
ExAC (Exome Aggregation Consortium)CFAP20 (select the gene name)
Genetic variants : HAPMAP29105
Genomic Variants (DGV)CFAP20 [DGVbeta]
DECIPHER (Syndromes)16:58147497-58163296  ENSG00000070761
CONAN: Copy Number AnalysisCFAP20 
Mutations
ICGC Data PortalCFAP20 
TCGA Data PortalCFAP20 
Broad Tumor PortalCFAP20
OASIS PortalCFAP20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP20
BioMutasearch CFAP20
DgiDB (Drug Gene Interaction Database)CFAP20
DoCM (Curated mutations)CFAP20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP20 (select a term)
intoGenCFAP20
Cancer3DCFAP20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP20
Genetic Testing Registry CFAP20
NextProtQ9Y6A4 [Medical]
TSGene29105
GENETestsCFAP20
Huge Navigator CFAP20 [HugePedia]
snp3D : Map Gene to Disease29105
BioCentury BCIQCFAP20
ClinGenCFAP20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29105
Chemical/Pharm GKB GenePA162378384
Clinical trialCFAP20
Miscellaneous
canSAR (ICR)CFAP20 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP20
EVEXCFAP20
GoPubMedCFAP20
iHOPCFAP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:15 CET 2017

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