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CFAP221 (cilia and flagella associated protein 221)

Identity

Alias_symbol (synonym)FAP221
PCDP1
Other alias
HGNC (Hugo) CFAP221
LocusID (NCBI) 200373
Atlas_Id 61753
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 119544432 and ends at 119656661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP221   33720
Cards
Entrez_Gene (NCBI)CFAP221  200373  cilia and flagella associated protein 221
AliasesFAP221; PCDP1
GeneCards (Weizmann)CFAP221
Ensembl hg19 (Hinxton)ENSG00000163075 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163075 [Gene_View]  chr2:119544432-119656661 [Contig_View]  CFAP221 [Vega]
ICGC DataPortalENSG00000163075
TCGA cBioPortalCFAP221
AceView (NCBI)CFAP221
Genatlas (Paris)CFAP221
WikiGenes200373
SOURCE (Princeton)CFAP221
Genetics Home Reference (NIH)CFAP221
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP221  -     chr2:119544432-119656661 +  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP221  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblCFAP221 - 2q14.2 [CytoView hg19]  CFAP221 - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBICFAP221 [Mapview hg19]  CFAP221 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI949948 AK126306 AK293665 AK304416 AV654519
RefSeq transcript (Entrez)NM_001029996 NM_001271049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP221
Cluster EST : UnigeneHs.496753 [ NCBI ]
CGAP (NCI)Hs.496753
Alternative Splicing GalleryENSG00000163075
Gene ExpressionCFAP221 [ NCBI-GEO ]   CFAP221 [ EBI - ARRAY_EXPRESS ]   CFAP221 [ SEEK ]   CFAP221 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP221 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200373
GTEX Portal (Tissue expression)CFAP221
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0U5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0U5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0U5
Splice isoforms : SwissVarQ4G0U5
PhosPhoSitePlusQ4G0U5
Domains : Interpro (EBI)PapD-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP221
DMDM Disease mutations200373
Blocks (Seattle)CFAP221
SuperfamilyQ4G0U5
Human Protein AtlasENSG00000163075
Peptide AtlasQ4G0U5
HPRD18748
IPIIPI00967097   IPI00910451   IPI00910099   IPI00748431   IPI00917614   IPI00915859   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0U5
IntAct (EBI)Q4G0U5
FunCoupENSG00000163075
BioGRIDCFAP221
STRING (EMBL)CFAP221
ZODIACCFAP221
Ontologies - Pathways
QuickGOQ4G0U5
Ontology : AmiGOcilium movement  calmodulin binding  cytoplasm  cilium  axoneme  motile cilium assembly  cilium assembly  
Ontology : EGO-EBIcilium movement  calmodulin binding  cytoplasm  cilium  axoneme  motile cilium assembly  cilium assembly  
NDEx NetworkCFAP221
Atlas of Cancer Signalling NetworkCFAP221
Wikipedia pathwaysCFAP221
Orthology - Evolution
OrthoDB200373
GeneTree (enSembl)ENSG00000163075
Phylogenetic Trees/Animal Genes : TreeFamCFAP221
HOVERGENQ4G0U5
HOGENOMQ4G0U5
Homologs : HomoloGeneCFAP221
Homology/Alignments : Family Browser (UCSC)CFAP221
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP221 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP221
dbVarCFAP221
ClinVarCFAP221
1000_GenomesCFAP221 
Exome Variant ServerCFAP221
ExAC (Exome Aggregation Consortium)CFAP221 (select the gene name)
Genetic variants : HAPMAP200373
Genomic Variants (DGV)CFAP221 [DGVbeta]
DECIPHERCFAP221 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP221 
Mutations
ICGC Data PortalCFAP221 
TCGA Data PortalCFAP221 
Broad Tumor PortalCFAP221
OASIS PortalCFAP221 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP221
BioMutasearch CFAP221
DgiDB (Drug Gene Interaction Database)CFAP221
DoCM (Curated mutations)CFAP221 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP221 (select a term)
intoGenCFAP221
Cancer3DCFAP221(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP221
Genetic Testing Registry CFAP221
NextProtQ4G0U5 [Medical]
TSGene200373
GENETestsCFAP221
Target ValidationCFAP221
Huge Navigator CFAP221 [HugePedia]
snp3D : Map Gene to Disease200373
BioCentury BCIQCFAP221
ClinGenCFAP221
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200373
Chemical/Pharm GKB GenePA166123678
Clinical trialCFAP221
Miscellaneous
canSAR (ICR)CFAP221 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP221
EVEXCFAP221
GoPubMedCFAP221
iHOPCFAP221
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:24 CEST 2017

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