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CFAP299 (cilia and flagella associated protein 299)

Identity

Alias (NCBI)C4orf22
HGNC (Hugo) CFAP299
LocusID (NCBI) 255119
Atlas_Id 80327
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 80335720 and ends at 80963756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CFAP299   28554
Cards
Entrez_Gene (NCBI)CFAP299  255119  cilia and flagella associated protein 299
AliasesC4orf22
GeneCards (Weizmann)CFAP299
Ensembl hg19 (Hinxton)ENSG00000197826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197826 [Gene_View]  ENSG00000197826 [Sequence]  chr4:80335720-80963756 [Contig_View]  CFAP299 [Vega]
ICGC DataPortalENSG00000197826
TCGA cBioPortalCFAP299
AceView (NCBI)CFAP299
Genatlas (Paris)CFAP299
WikiGenes255119
SOURCE (Princeton)CFAP299
Genetics Home Reference (NIH)CFAP299
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP299  -     chr4:80335720-80963756 +  4q21.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP299  -     4q21.21   [Description]    (hg19-Feb_2009)
GoldenPathCFAP299 - 4q21.21 [CytoView hg19]  CFAP299 - 4q21.21 [CytoView hg38]
ImmunoBaseENSG00000197826
genome Data Viewer NCBICFAP299 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI650567 AK128642 AY349359 BC034296 DB522959
RefSeq transcript (Entrez)NM_001206997 NM_152770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP299
Alternative Splicing GalleryENSG00000197826
Gene ExpressionCFAP299 [ NCBI-GEO ]   CFAP299 [ EBI - ARRAY_EXPRESS ]   CFAP299 [ SEEK ]   CFAP299 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP299 [ Firebrowse - Broad ]
GenevisibleExpression of CFAP299 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255119
GTEX Portal (Tissue expression)CFAP299
Human Protein AtlasENSG00000197826-CFAP299 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6V702   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6V702  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6V702
Splice isoforms : SwissVarQ6V702
PhosPhoSitePlusQ6V702
Domains : Interpro (EBI)DUF4464   
Domain families : Pfam (Sanger)DUF4464 (PF14713)   
Domain families : Pfam (NCBI)pfam14713   
Conserved Domain (NCBI)CFAP299
DMDM Disease mutations255119
Blocks (Seattle)CFAP299
SuperfamilyQ6V702
Human Protein Atlas [tissue]ENSG00000197826-CFAP299 [tissue]
Peptide AtlasQ6V702
IPIIPI00166701   IPI00743965   IPI00443660   IPI00966401   
Protein Interaction databases
DIP (DOE-UCLA)Q6V702
IntAct (EBI)Q6V702
FunCoupENSG00000197826
BioGRIDCFAP299
STRING (EMBL)CFAP299
ZODIACCFAP299
Ontologies - Pathways
QuickGOQ6V702
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkCFAP299
Atlas of Cancer Signalling NetworkCFAP299
Wikipedia pathwaysCFAP299
Orthology - Evolution
OrthoDB255119
GeneTree (enSembl)ENSG00000197826
Phylogenetic Trees/Animal Genes : TreeFamCFAP299
HOGENOMQ6V702
Homologs : HomoloGeneCFAP299
Homology/Alignments : Family Browser (UCSC)CFAP299
Gene fusions - Rearrangements
Fusion : QuiverCFAP299
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP299 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP299
dbVarCFAP299
ClinVarCFAP299
1000_GenomesCFAP299 
Exome Variant ServerCFAP299
GNOMAD BrowserENSG00000197826
Varsome BrowserCFAP299
Genetic variants : HAPMAP255119
Genomic Variants (DGV)CFAP299 [DGVbeta]
DECIPHERCFAP299 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP299 
Mutations
ICGC Data PortalCFAP299 
TCGA Data PortalCFAP299 
Broad Tumor PortalCFAP299
OASIS PortalCFAP299 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCFAP299  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCFAP299
Mutations and Diseases : HGMDCFAP299
BioMutasearch CFAP299
DgiDB (Drug Gene Interaction Database)CFAP299
DoCM (Curated mutations)CFAP299 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP299 (select a term)
intoGenCFAP299
Cancer3DCFAP299(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCFAP299
MedgenCFAP299
Genetic Testing Registry CFAP299
NextProtQ6V702 [Medical]
TSGene255119
GENETestsCFAP299
Target ValidationCFAP299
Huge Navigator CFAP299 [HugePedia]
snp3D : Map Gene to Disease255119
BioCentury BCIQCFAP299
ClinGenCFAP299
Clinical trials, drugs, therapy
Protein Interactions : CTD255119
Pharm GKB GenePA145008853
Clinical trialCFAP299
Miscellaneous
canSAR (ICR)CFAP299 (select the gene name)
HarmonizomeCFAP299
DataMed IndexCFAP299
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP299
EVEXCFAP299
GoPubMedCFAP299
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:08:29 CEST 2020

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