Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CFAP36 (cilia and flagella associated protein 36)

Identity

Alias_namesCCDC104
coiled-coil domain containing 104
Alias_symbol (synonym)MGC15407
BARTL1
Other alias
HGNC (Hugo) CFAP36
LocusID (NCBI) 112942
Atlas_Id 61754
Location 2p16.1  [Link to chromosome band 2p16]
Location_base_pair Starts at 55519595 and ends at 55545080 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP36   30540
Cards
Entrez_Gene (NCBI)CFAP36  112942  cilia and flagella associated protein 36
AliasesBARTL1; CCDC104
GeneCards (Weizmann)CFAP36
Ensembl hg19 (Hinxton)ENSG00000163001 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163001 [Gene_View]  chr2:55519595-55545080 [Contig_View]  CFAP36 [Vega]
ICGC DataPortalENSG00000163001
TCGA cBioPortalCFAP36
AceView (NCBI)CFAP36
Genatlas (Paris)CFAP36
WikiGenes112942
SOURCE (Princeton)CFAP36
Genetics Home Reference (NIH)CFAP36
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP36  -     chr2:55519595-55545080 +  2p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP36  -     2p16.1   [Description]    (hg19-Feb_2009)
EnsemblCFAP36 - 2p16.1 [CytoView hg19]  CFAP36 - 2p16.1 [CytoView hg38]
Mapping of homologs : NCBICFAP36 [Mapview hg19]  CFAP36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308776 AK309764 AY358097 BC001797 BC010011
RefSeq transcript (Entrez)NM_001282761 NM_080667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP36
Cluster EST : UnigeneHs.264208 [ NCBI ]
CGAP (NCI)Hs.264208
Alternative Splicing GalleryENSG00000163001
Gene ExpressionCFAP36 [ NCBI-GEO ]   CFAP36 [ EBI - ARRAY_EXPRESS ]   CFAP36 [ SEEK ]   CFAP36 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112942
GTEX Portal (Tissue expression)CFAP36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G28
Splice isoforms : SwissVarQ96G28
PhosPhoSitePlusQ96G28
Domains : Interpro (EBI)ARF-like_2-bdp_dom   
Domain families : Pfam (Sanger)ARL2_Bind_BART (PF11527)   
Domain families : Pfam (NCBI)pfam11527   
Conserved Domain (NCBI)CFAP36
DMDM Disease mutations112942
Blocks (Seattle)CFAP36
SuperfamilyQ96G28
Human Protein AtlasENSG00000163001
Peptide AtlasQ96G28
HPRD14445
IPIIPI00171833   IPI00412539   IPI00892552   IPI00893132   IPI00892803   
Protein Interaction databases
DIP (DOE-UCLA)Q96G28
IntAct (EBI)Q96G28
FunCoupENSG00000163001
BioGRIDCFAP36
STRING (EMBL)CFAP36
ZODIACCFAP36
Ontologies - Pathways
QuickGOQ96G28
Ontology : AmiGOnucleus  cytoplasm  cell projection  
Ontology : EGO-EBInucleus  cytoplasm  cell projection  
NDEx NetworkCFAP36
Atlas of Cancer Signalling NetworkCFAP36
Wikipedia pathwaysCFAP36
Orthology - Evolution
OrthoDB112942
GeneTree (enSembl)ENSG00000163001
Phylogenetic Trees/Animal Genes : TreeFamCFAP36
HOVERGENQ96G28
HOGENOMQ96G28
Homologs : HomoloGeneCFAP36
Homology/Alignments : Family Browser (UCSC)CFAP36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP36
dbVarCFAP36
ClinVarCFAP36
1000_GenomesCFAP36 
Exome Variant ServerCFAP36
ExAC (Exome Aggregation Consortium)CFAP36 (select the gene name)
Genetic variants : HAPMAP112942
Genomic Variants (DGV)CFAP36 [DGVbeta]
DECIPHERCFAP36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP36 
Mutations
ICGC Data PortalCFAP36 
TCGA Data PortalCFAP36 
Broad Tumor PortalCFAP36
OASIS PortalCFAP36 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP36
BioMutasearch CFAP36
DgiDB (Drug Gene Interaction Database)CFAP36
DoCM (Curated mutations)CFAP36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP36 (select a term)
intoGenCFAP36
Cancer3DCFAP36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCFAP36
Genetic Testing Registry CFAP36
NextProtQ96G28 [Medical]
TSGene112942
GENETestsCFAP36
Target ValidationCFAP36
Huge Navigator CFAP36 [HugePedia]
snp3D : Map Gene to Disease112942
BioCentury BCIQCFAP36
ClinGenCFAP36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112942
Chemical/Pharm GKB GenePA145008608
Clinical trialCFAP36
Miscellaneous
canSAR (ICR)CFAP36 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP36
EVEXCFAP36
GoPubMedCFAP36
iHOPCFAP36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:24 CEST 2017

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