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CFAP43 (cilia and flagella associated protein 43)

Identity

Alias_namesC10orf79
WDR96
chromosome 10 open reading frame 79
WD repeat domain 96
Alias_symbol (synonym)FLJ36006
bA373N18.2
FLJ22944
Other alias
HGNC (Hugo) CFAP43
LocusID (NCBI) 80217
Atlas_Id 61755
Location 10q25.1  [Link to chromosome band 10q25]
Location_base_pair Starts at 104129888 and ends at 104232377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP43   26684
Cards
Entrez_Gene (NCBI)CFAP43  80217  cilia and flagella associated protein 43
AliasesC10orf79; WDR96; bA373N18.2
GeneCards (Weizmann)CFAP43
Ensembl hg19 (Hinxton)ENSG00000197748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197748 [Gene_View]  chr10:104129888-104232377 [Contig_View]  CFAP43 [Vega]
ICGC DataPortalENSG00000197748
TCGA cBioPortalCFAP43
AceView (NCBI)CFAP43
Genatlas (Paris)CFAP43
WikiGenes80217
SOURCE (Princeton)CFAP43
Genetics Home Reference (NIH)CFAP43
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP43  -     chr10:104129888-104232377 -  10q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP43  -     10q25.1   [Description]    (hg19-Feb_2009)
EnsemblCFAP43 - 10q25.1 [CytoView hg19]  CFAP43 - 10q25.1 [CytoView hg38]
Mapping of homologs : NCBICFAP43 [Mapview hg19]  CFAP43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026597 AK093325 AK295018 AL136901 AL833836
RefSeq transcript (Entrez)NM_025145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP43
Cluster EST : UnigeneHs.288927 [ NCBI ]
CGAP (NCI)Hs.288927
Alternative Splicing GalleryENSG00000197748
Gene ExpressionCFAP43 [ NCBI-GEO ]   CFAP43 [ EBI - ARRAY_EXPRESS ]   CFAP43 [ SEEK ]   CFAP43 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80217
GTEX Portal (Tissue expression)CFAP43
Human Protein AtlasENSG00000197748-CFAP43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDM7
Splice isoforms : SwissVarQ8NDM7
PhosPhoSitePlusQ8NDM7
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP43
DMDM Disease mutations80217
Blocks (Seattle)CFAP43
SuperfamilyQ8NDM7
Human Protein Atlas [tissue]ENSG00000197748-CFAP43 [tissue]
Peptide AtlasQ8NDM7
HPRD07625
IPIIPI00478993   IPI00329556   IPI00642721   IPI00873895   IPI00940089   IPI00178727   IPI00966689   IPI00642232   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDM7
IntAct (EBI)Q8NDM7
FunCoupENSG00000197748
BioGRIDCFAP43
STRING (EMBL)CFAP43
ZODIACCFAP43
Ontologies - Pathways
QuickGOQ8NDM7
Ontology : AmiGOcell projection  
Ontology : EGO-EBIcell projection  
NDEx NetworkCFAP43
Atlas of Cancer Signalling NetworkCFAP43
Wikipedia pathwaysCFAP43
Orthology - Evolution
OrthoDB80217
GeneTree (enSembl)ENSG00000197748
Phylogenetic Trees/Animal Genes : TreeFamCFAP43
HOVERGENQ8NDM7
HOGENOMQ8NDM7
Homologs : HomoloGeneCFAP43
Homology/Alignments : Family Browser (UCSC)CFAP43
Gene fusions - Rearrangements
Tumor Fusion PortalCFAP43
Polyiorphks}s : SNP and Copy number variants
NCBI Variation ViewerCFAP43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP43
dbVarCFAP43
ClinVarCFAP43
1000_GenomesCFAP43 
Exome Variant ServerCFAP43
ExAC (Exome Aggregation Consortium)ENSG00000197748
GNOMAD BrowserENSG00000197748
Genetic variants : HAPMAP80217
Genomic Variants (DGV)CFAP43 [DGVbeta]
DECIPHERCFAP43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP43 
Mutations
ICGC Data PortalCFAP43 
TCGA Data PortalCFAP43 
Broad Tumor PortalCFAP43
OASIS PortalCFAP43 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP43
BioMutasearch CFAP43
DgiDB (Drug Gene Interaction Database)CFAP43
DoCM (Curated mutations)CFAP43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP43 (select a term)
intoGenCFAP43
Cancer3DCFAP43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCFAP43
MedgenCFAP43
Genetic Testing Registry CFAP43
NextProtQ8NDM7 [Medical]
TSGene80217
GENETestsCFAP43
Target ValidationCFAP43
Huge Navigator CFAP43 [HugePedia]
snp3D : Map Gene to Disease80217
BioCentury BCIQCFAP43
ClinGenCFAP43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80217
Chemical/Pharm GKB GenePA134981723
Clinical trialCFAP43
Miscellaneous
canSAR (ICR)CFAP43 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP43
EVEXCFAP43
GoPubMedCFAP43
iHOPCFAP43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:21 CET 2017

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