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CFAP45 (cilia and flagella associated protein 45)

Identity

Alias_namesCCDC19
coiled-coil domain containing 19
Alias_symbol (synonym)NESG1
Other alias
HGNC (Hugo) CFAP45
LocusID (NCBI) 25790
Atlas_Id 54829
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159872364 and ends at 159900116 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CFAP45 (1q23.2) / BTAF1 (10q23.32)MYZAP (15q21.3) / CFAP45 (1q23.2)THADA (2p21) / CFAP45 (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CFAP45   17229
Cards
Entrez_Gene (NCBI)CFAP45  25790  cilia and flagella associated protein 45
AliasesCCDC19; NESG1
GeneCards (Weizmann)CFAP45
Ensembl hg19 (Hinxton)ENSG00000213085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213085 [Gene_View]  chr1:159872364-159900116 [Contig_View]  CFAP45 [Vega]
ICGC DataPortalENSG00000213085
TCGA cBioPortalCFAP45
AceView (NCBI)CFAP45
Genatlas (Paris)CFAP45
WikiGenes25790
SOURCE (Princeton)CFAP45
Genetics Home Reference (NIH)CFAP45
Genomic and cartography
GoldenPath hg38 (UCSC)CFAP45  -     chr1:159872364-159900116 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CFAP45  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblCFAP45 - 1q23.2 [CytoView hg19]  CFAP45 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBICFAP45 [Mapview hg19]  CFAP45 [Mapview hg38]
OMIM605152   
Gene and transcription
Genbank (Entrez)AF094758 AK225566 AK225582 AK292249 AK308262
RefSeq transcript (Entrez)NM_012337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CFAP45
Cluster EST : UnigeneHs.647705 [ NCBI ]
CGAP (NCI)Hs.647705
Alternative Splicing GalleryENSG00000213085
Gene ExpressionCFAP45 [ NCBI-GEO ]   CFAP45 [ EBI - ARRAY_EXPRESS ]   CFAP45 [ SEEK ]   CFAP45 [ MEM ]
Gene Expression Viewer (FireBrowse)CFAP45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25790
GTEX Portal (Tissue expression)CFAP45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL16
Splice isoforms : SwissVarQ9UL16
PhosPhoSitePlusQ9UL16
Domains : Interpro (EBI)CFAP45   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CFAP45
DMDM Disease mutations25790
Blocks (Seattle)CFAP45
SuperfamilyQ9UL16
Human Protein AtlasENSG00000213085
Peptide AtlasQ9UL16
HPRD05514
IPIIPI00017619   IPI01010911   IPI00883997   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL16
IntAct (EBI)Q9UL16
FunCoupENSG00000213085
BioGRIDCFAP45
STRING (EMBL)CFAP45
ZODIACCFAP45
Ontologies - Pathways
QuickGOQ9UL16
Ontology : AmiGOnucleus  nucleoplasm  cilium  
Ontology : EGO-EBInucleus  nucleoplasm  cilium  
NDEx NetworkCFAP45
Atlas of Cancer Signalling NetworkCFAP45
Wikipedia pathwaysCFAP45
Orthology - Evolution
OrthoDB25790
GeneTree (enSembl)ENSG00000213085
Phylogenetic Trees/Animal Genes : TreeFamCFAP45
HOVERGENQ9UL16
HOGENOMQ9UL16
Homologs : HomoloGeneCFAP45
Homology/Alignments : Family Browser (UCSC)CFAP45
Gene fusions - Rearrangements
Fusion : MitelmanTHADA/CFAP45 [2p21/1q23.2]  [t(1;2)(q23;p21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCFAP45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CFAP45
dbVarCFAP45
ClinVarCFAP45
1000_GenomesCFAP45 
Exome Variant ServerCFAP45
ExAC (Exome Aggregation Consortium)CFAP45 (select the gene name)
Genetic variants : HAPMAP25790
Genomic Variants (DGV)CFAP45 [DGVbeta]
DECIPHERCFAP45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCFAP45 
Mutations
ICGC Data PortalCFAP45 
TCGA Data PortalCFAP45 
Broad Tumor PortalCFAP45
OASIS PortalCFAP45 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCFAP45
BioMutasearch CFAP45
DgiDB (Drug Gene Interaction Database)CFAP45
DoCM (Curated mutations)CFAP45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CFAP45 (select a term)
intoGenCFAP45
Cancer3DCFAP45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605152   
Orphanet
MedgenCFAP45
Genetic Testing Registry CFAP45
NextProtQ9UL16 [Medical]
TSGene25790
GENETestsCFAP45
Huge Navigator CFAP45 [HugePedia]
snp3D : Map Gene to Disease25790
BioCentury BCIQCFAP45
ClinGenCFAP45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25790
Chemical/Pharm GKB GenePA142672179
Clinical trialCFAP45
Miscellaneous
canSAR (ICR)CFAP45 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCFAP45
EVEXCFAP45
GoPubMedCFAP45
iHOPCFAP45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:19 CEST 2017

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